PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010971.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 689aa    MW: 73414.8 Da    PI: 8.6144
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010971.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.3e-31272329260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +Dgy+WrKYGqK+vk se+prsY++Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  Do010971.1 272 EDGYSWRKYGQKQVKHSEYPRSYFKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHPK 329
                 8****************************************.***************85 PP
2WRKY105.52.8e-33480538159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k+v++tYeg+Hnhe
  Do010971.1 480 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKAVITTYEGKHNHE 538
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.84E-25265330IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-27265330IPR003657WRKY domain
PROSITE profilePS5081121.918266330IPR003657WRKY domain
SMARTSM007744.0E-34271329IPR003657WRKY domain
PfamPF031061.1E-23272328IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37465540IPR003657WRKY domain
SuperFamilySSF1182904.97E-29472540IPR003657WRKY domain
PROSITE profilePS5081137.608475540IPR003657WRKY domain
SMARTSM007741.2E-38480539IPR003657WRKY domain
PfamPF031061.9E-25481538IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MPGLQTGAFP PDTIGRQSNE GDKAGFEKDG LSVAIRSPRE EGRSLPRTPQ FGQKSSLGSS  60
LAERMQARAG FRVPKLSMPF STGTAVGADN SVPALSPYLT IPPGLSPASL LESPVVFISN  120
ATGQASPTTG KLFMLGGTND NDPIRFGGPP LGDDPDAFSF KPLDLKSSHY TAEGKKESLC  180
NNQPLLPGTH VSVKTETKIQ PVQEANLLGR LNQQNHSGQT NMKGGSHDSK LSRLAPVTGA  240
SNEHVPSPQG QSAEEGDAKG DYPAMATTTP AEDGYSWRKY GQKQVKHSEY PRSYFKCTHP  300
NCQVKKKVER SHEGHITEII YKGTHNHPKP TQNRRPGVPP VHPFGDSVQA DVPDNPGSHT  360
NAAEARQAWH NNAGVQNLHG DGMDATSSPS VPGELCDSSP SMQIHDASGV DVTSAVSDEV  420
NGDDRVTHGS MSQGGADAEG DELESKRRKL ESYAIDMNTA SRAVREPRVV IQTTSEVDIL  480
DDGYRWRKYG QKVVKGNPNP RSYYKCTHPG CSVRKHVERA SHDLKAVITT YEGKHNHEVP  540
AARNSGHPST ATANVSTTRR PEHPSVHDGL LRHLGGCGAP FGLLPSRNPL APVVNYPTYA  600
SSALGGSGPA SLPSLPMPGG RLGPVEGLNL PMRAPSSLHQ HPLLRHRQAM QAAGLVAPKA  660
DVKVDAGGAA AASVYQLMRS GLPLGQHQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37272541878Probable WRKY transcription factor 4
2lex_A7e-37272541878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010971.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823122.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-119WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1E5WCK30.0A0A1E5WCK3_9POAL; Putative WRKY transcription factor 2
STRINGSi012785m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-121WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]