PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010967.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 518aa    MW: 54428.1 Da    PI: 6.1686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010967.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-067394223
                EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                kCp C+k+F++   L  H+r+H
  Do010967.1 73 KCPECPKMFPTAKALFGHLRKH 94
                8********************9 PP
2zf-C2H218.74.9e-06348370123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y Cp+CgksF+++  L  H+++H
  Do010967.1 348 YGCPKCGKSFPSHQALGGHMSSH 370
                 67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2867294IPR007087Zinc finger, C2H2
SMARTSM003557.9E-47294IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.17E-87394No hitNo description
PfamPF139125.2E-57396IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-8343370No hitNo description
Gene3DG3DSA:3.30.160.605.1E-4345372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-9348370IPR007087Zinc finger, C2H2
SMARTSM003550.0026348370IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.468348375IPR007087Zinc finger, C2H2
PROSITE patternPS000280350370IPR007087Zinc finger, C2H2
PfamPF139126.0E-7444467IPR007087Zinc finger, C2H2
SMARTSM003550.65444466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621444471IPR007087Zinc finger, C2H2
PROSITE patternPS000280446466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDPRAYEFQL QAAEAAAAEA ASPVRAADDD EPEPPIPKAL ELEAQGSADA TPAPQQGSGV  60
APMGAGNAEA FIKCPECPKM FPTAKALFGH LRKHPERGYK GSTRPATASA AATVAGDKKP  120
KPKPKPKPKD VAQKEDDVSA MNVTAAAAVA GEKKLWEHAE LSSKRPVTTK RGRALEAGMQ  180
ASSGEEVEAA RALLQMASSS RSTSETGQQE SVQQVHAPDA VSWHRILPDV EQPMLLDHVD  240
DEHQTPEAEQ TVQPEIVLEL SAESQTPAVK ELTDLEITAQ AFVIMVAENK SIAPGSSSEA  300
GAKETKNKKP RVLDLEQTAS SPAPPPPPKG DNGKAPWRIP PPASNKKYGC PKCGKSFPSH  360
QALGGHMSSH VKGKSEGDDR NLALIESVQT ILANRRYSGD SFFTGGSYGM GFGASKFLAA  420
SYGAGAGMGQ VVPPPAAAHR AEQHACAECR MFFPSGQALG GHMRRHWLPK AAPAKPQPAP  480
APAPAPTPVE PAPAPAPAVL DFNLNELPEE AEGETDQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5WCG20.0A0A1E5WCG2_9POAL; Uncharacterized protein
STRINGPavir.Gb01481.1.p1e-157(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-07C2H2 family protein