 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Do010926.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
Family |
NAC |
Protein Properties |
Length: 304aa MW: 33276.6 Da PI: 9.6128 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do010926.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 105.2 | 8.5e-33 | 61 | 203 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80
lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+ +
Do010926.1 61 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhsvdgddGGE 154
799************.99****998885665442...133333665557**********.555666688******************845555544337 PP
NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+W++tgk+++vls +g+ g kk+Lv+y g+++k+ekt+Wvmh+y+l
Do010926.1 155 TRWHKTGKTRPVLS-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 203
78************.999***********6657999999*********98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MTWCNGFNDV RAAVESSLSP AAAAGKKAAA SLAVLVKMCP SCGHRAQYEK ETTTIQDLPG 60 LPAGVKFDPT DQELLEHLEG KARPDSRKLH PLVDEFIPTI EGENGICYTH PERLPGVSKD 120 GLVRHFFHRP SKAYTTGTRK RRKVHSVDGD DGGETRWHKT GKTRPVLSNG RPRGYKKILV 180 LYTNYGKQRK PEKTNWVMHQ YHLGSDEEER DGELVVSKVF FQTQPRQCGS TAAKEAVVAN 240 NNALAGHQHP GGVLREANGF DQFYSTGAMI GYGQGVPNRA PPAPAAPHFM PSFAVHAARA 300 SFGP
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT065544 | 0.0 | BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds. |
GenBank | JX428532 | 0.0 | JX428532.1 Zea mays subsp. mays clone pUT3132 NAC87 NAC type transcription factor mRNA, partial cds. |