PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010911.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 780aa    MW: 85876.4 Da    PI: 5.4857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010911.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-131462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv    +  g  +W+++++  g+ R++k+c++rw +yl
       Do010911.1 14 KGPWTAEEDQKLVSFLLLNNGQyCWRAVPKLAGLLRCGKSCRLRWTNYL 62
                     79*****************999***********99************97 PP
2Myb_DNA-binding49.41e-1571111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++eE++  + ++++lG++ W++Ia++++ gRt++++k++w++
       Do010911.1  71 LSEEEEKTVIYLHAELGNR-WSKIASHLP-GRTDNEIKNHWNT 111
                      59*****************.*********.***********97 PP
3Myb_DNA-binding50.54.6e-16369408647
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +eE++   d+++qlG++ W++Ia++++ gRt++++k++w+++
       Do010911.1 369 EEEEKTVTDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 408
                      79***************.*********.************97 PP
4Myb_DNA-binding52.79.7e-17562603447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++eE++  +d++++lG++ W++Ia+ ++ gRt++++k++w+++
       Do010911.1 562 LSEEEEKTVIDLHEKLGNR-WSKIASQLP-GRTDNEIKNHWNTH 603
                      59*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-18564IPR009057Homeodomain-like
PROSITE profilePS5129412.539962IPR017930Myb domain
SuperFamilySSF466895.31E-2411109IPR009057Homeodomain-like
SMARTSM007174.5E-81364IPR001005SANT/Myb domain
PfamPF002491.3E-111462IPR001005SANT/Myb domain
CDDcd001677.81E-61662No hitNo description
PROSITE profilePS5129425.5563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2365117IPR009057Homeodomain-like
SMARTSM007172.5E-1567115IPR001005SANT/Myb domain
PfamPF002495.9E-1471111IPR001005SANT/Myb domain
CDDcd001676.10E-1172113No hitNo description
PROSITE profilePS5129418.245358413IPR017930Myb domain
SMARTSM007177.3E-12362411IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-19369410IPR009057Homeodomain-like
SuperFamilySSF466891.33E-12369419IPR009057Homeodomain-like
PfamPF002491.4E-13369408IPR001005SANT/Myb domain
CDDcd001672.42E-10369409No hitNo description
Gene3DG3DSA:1.10.10.606.2E-5540552IPR009057Homeodomain-like
PROSITE profilePS500904.17540553IPR017877Myb-like domain
SuperFamilySSF466892.78E-21540613IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-24553608IPR009057Homeodomain-like
PROSITE profilePS5129427.309554608IPR017930Myb domain
SMARTSM007171.1E-15558606IPR001005SANT/Myb domain
PfamPF002495.1E-15562603IPR001005SANT/Myb domain
CDDcd001672.72E-11563604No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL LNNGQYCWRA VPKLAGLLRC GKSCRLRWTN  60
YLRPDLKRGL LSEEEEKTVI YLHAELGNRW SKIASHLPGR TDNEIKNHWN TNIKKKLRKM  120
GIDPVTHKPV QQPAPPAQQH PPEKKAAPAG TVSGPGLGHE AFYTDELPIV DLLDDIDVVL  180
VAPPAVNSGI SAAYSPEPSP SSSSSSSSSS YYSSATGSSG GSGIVDGEWP EWPQMTEWPE  240
SMWLDDVVMG PTPWEFEDPF VTYQSIELFA SRHQLIRSFP SPPPPPYIPT GDRLSCTGPG  300
LEVLFSRFQR RAQWLFRAVE HHHLVAKVPT WKTYSTSAFR LFRIAALREE LQAAVDQLPP  360
AGPEAWLLEE EEKTVTDLHA QLGNRWSKIA SHLPGRTDNE IKNHWNTHIK KKLRNMGIDP  420
VTHKPLQPAP PQEPTGSPEE EKIVTAITPE HEAFCTDEVP MAHLLDHIVF PGDEVGAHPA  480
TSGGITTAYS PEFFSSSYSA SVAASSGGSS SVDGEWPDSP PKDGLAGGVD VAAGGRGLLR  540
CGKSCRLRWT NYLRPDLKRG LLSEEEEKTV IDLHEKLGNR WSKIASQLPG RTDNEIKNHW  600
NTHIKKKLRK MGIDPVTHGP LQQPAPPPPL TPQELDNSGP PEEEKAVVTA ITPGSAGHEA  660
FRIDEVPMAH LLDDIVIPGD VVVDALPADN NSGTGYSPGS SSTSSSSYSA SPPASSGGSS  720
IVDGEWPEWP QMMEWPDSMW LDDVAVGPTP WEVEDPFLAY QWIALFDHQE TWNHSRVELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26126085108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010911.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0837351e-132BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds.
GenBankBT0855211e-132BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds.
GenBankBT0856251e-132BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802264.11e-121transcription factor MYB20-like
TrEMBLA0A2S3GZJ91e-120A0A2S3GZJ9_9POAL; Uncharacterized protein
STRINGPavir.Ba02148.1.p1e-120(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.15e-74myb domain protein 20