PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37070.6 Da PI: 7.1937 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163 | 1.1e-50 | 9 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 lppGfrFhPtdeel+ +yL+k++++ ++++ vi+evdiyk++PwdLp k+ +e ewyfFs+r++ky++g r+nr++ sgyWkatg+dk+++ + Do010860.1 9 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPDKAIFGEAEWYFFSPRERKYPNGVRPNRTAGSGYWKATGTDKPITLSgagp 106 79***************************9.89***************77667899**************************************97777 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kk Lvfykgr pkg kt+W+mheyrl Do010860.1 107 adssdSRAMIGVKKALVFYKGRPPKGMKTSWIMHEYRL 144 766655556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-62 | 6 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.477 | 9 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-26 | 10 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MATSACTSLP PGFRFHPTDE ELILHYLRKR AAAAPCPAPV IAEVDIYKFD PWDLPDKAIF 60 GEAEWYFFSP RERKYPNGVR PNRTAGSGYW KATGTDKPIT LSGAGPADSS DSRAMIGVKK 120 ALVFYKGRPP KGMKTSWIMH EYRLAEALAA ANSYRPMRFK NSSMRLDDWV LCRIYKKTTP 180 QLYSSPSHDE PSMDGGLDLG RQQDDSVSAD DIVVTYASAG RLPRPASVSD YLVDYPAVSE 240 LFENMPAPET TVQLGMDAGR FYATNNSEAA SSSSAQQQSS YKRRFMEDYS NSDLNILHAS 300 SNKRVMSDHH ASMAVNNTFS SVFEPGQTSL PDRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-71 | 8 | 179 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-71 | 8 | 179 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-71 | 8 | 179 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-71 | 8 | 179 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-71 | 8 | 179 | 16 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-71 | 8 | 179 | 16 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955420 | 1e-170 | EU955420.1 Zea mays clone 1531701 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967928.1 | 0.0 | NAC domain-containing protein 18 | ||||
Refseq | XP_025816084.1 | 0.0 | NAC transcription factor 29-like | ||||
Swissprot | A0SPJ6 | 2e-83 | NAMB2_TRITD; NAC transcription factor NAM-B2 | ||||
TrEMBL | A0A1E5UWU9 | 0.0 | A0A1E5UWU9_9POAL; NAC transcription factor NAM-B2 | ||||
STRING | Pavir.Ea00837.1.p | 1e-176 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 4e-78 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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