PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010700.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 340aa    MW: 37738.3 Da    PI: 9.4705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010700.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-134185147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       Do010700.1 41 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 85
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-163591IPR009057Homeodomain-like
PROSITE profilePS5129415.4083690IPR017930Myb domain
TIGRFAMsTIGR015571.5E-183988IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-63991IPR009057Homeodomain-like
SMARTSM007175.3E-114088IPR001005SANT/Myb domain
PfamPF002492.9E-114185IPR001005SANT/Myb domain
CDDcd001672.17E-84386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVSASTPPVP PPPPQPQSDA AGSGEDASKK VRKPYTITKS RESWTEQEHD KFLEALQLFD  60
RDWKKIEAFV GSKTVIQIRS HAQKYFLKVQ KNGTSEHVPP PRPKRKAAHP YPQKASKNEP  120
NYGLKTDSSS IHRNSGMNAT VSSWAVSSIP PAVASSMVKE DLGPGTMAPN NFCSSSSEGP  180
PRTWQPGEAN DQINQVPSLR RQYLMIFLLI ILQCKIINQI LSTSTIPKTY VLIILPVHLF  240
FFLGSVFDPS TSGHLQKLKE MNPIDVETAL LLMRNLSINL TSPDFEDQDA ISVLLNWKKE  300
LSFILCILMQ RKLLSSYSTS DGLELESSRS SALATSAPFM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794460.0HF679446.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB40 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953449.11e-176protein REVEILLE 6 isoform X1
RefseqXP_014660001.11e-176protein REVEILLE 6 isoform X4
TrEMBLA0A1E5VVB20.0A0A1E5VVB2_9POAL; Protein REVEILLE 3
STRINGSi017977m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.12e-65MYB_related family protein