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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26568.8 Da PI: 8.2659 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 166 | 206 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Do010611.1 166 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 206 699*****************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.085 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 162 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-14 | 162 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-13 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-6 | 166 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.90E-6 | 180 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:0048462 | Biological Process | carpel formation | ||||
GO:0080126 | Biological Process | ovary septum development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHGATMMVPS TPPSPPCMQQ QAAHHFSSVP 60 HHMSAGGANG RATYHQDHQQ YSTVVTAASS CNGSARSEYY VAQDNAAGDG GSGGEGSATT 120 AAGSSAMREM IFRVAALQPV NIDPEMVRPP KRRNVRISTD PQSVAARMRR ERISERIRIL 180 QRLVPGGTKM DTASMLDEAI HYVKFLKTQV QSLERAAAAS GRRPAAPPAD NNGGAAPYPG 240 GRMNGQW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 152 | RPPKRR |
2 | 166 | 171 | RMRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010611.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726973 | 1e-151 | KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683432.1 | 1e-126 | transcription factor HEC1 | ||||
TrEMBL | A0A1E5W7V9 | 0.0 | A0A1E5W7V9_9POAL; Transcription factor HEC1 | ||||
STRING | Si015349m | 1e-126 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3103 | 36 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67060.1 | 2e-37 | bHLH family protein |