PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | AP2 | ||||||||
Protein Properties | Length: 545aa MW: 58517.1 Da PI: 5.8615 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.3 | 5.8e-11 | 134 | 190 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+ ++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Do010198.1 134 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 190 57*******************4444.2455535555.779999**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.05E-18 | 134 | 200 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-14 | 134 | 200 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-8 | 134 | 190 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-11 | 135 | 200 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-22 | 135 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.122 | 135 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 136 | 147 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.626 | 216 | 296 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0011 | 260 | 302 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-5 | 266 | 298 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-6 | 270 | 297 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 278 | 298 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MGSTNNWLGF ASFSGGSADD VLAPLPPRGD EAGAEPKLED FLGLQEPSTA AVAGRAFAGT 60 GASSIGLSMI KNWLRSQPAP APAGVDSMAL EATAAVSPEG SGTVADGSEG VGAVVEAAQQ 120 RKTAAVDTFG QRTSIYRGVT KHRWTGRYEA HLWDNSCRRE GQTRKGRQGG YDKEEKAARA 180 YDLAALKYWG TTTTTNFPMS NYEKELEEMK HMSRQEYVAS LRRHVWSKLC IFMELEIKSF 240 SNGLTLYIYW GTGKAVDFHV VPRFTEGLLG TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY 300 DVKSIIESSS LPVGGTTKRL KDVPDQSDMG MNGADSAGNM RATNLLTDGI GSYGPESYGY 360 SGWLPATMTP IPLQFSNGHG HSRLWCKPEQ DGAVVEAAHN LHHLQHFPAA GCTHNFFQSS 420 PIQDVTGVVD VPSPSVDSNA FLYSGGVSYH GAMSGGYAMP VATVVEGNPV VSGYGVEDAT 480 TSDLYGGRNL HYLSQGSPDP NTGKGDVYDQ QGVRYESWVP SVAVIPQKSA NVTVCHGTPL 540 FSVWK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010198.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004979180.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q6PQQ4 | 8e-88 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
TrEMBL | A0A1E5UT55 | 0.0 | A0A1E5UT55_9POAL; AP2-like ethylene-responsive transcription factor BBM2 | ||||
STRING | Si028170m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 3e-85 | AP2 family protein |