PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do010032.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 298aa MW: 31366.5 Da PI: 8.5072

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do010032.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	112	160	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +ah Er RR+r+++ f++L llP+ + +K++Ka+ + ++++YIk L+ Do010032.1 112 KAHIVTERERRRRMKDLFSNLHALLPHvP-----EKVDKATLVGETIDYIKALE 160 5899*********************77.....9**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.208	109	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-13	112	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.95E-12	112	161	No hit	No description
Pfam	PF00010	9.2E-10	112	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-14	113	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-7	115	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MAQDGPHDQQ DTDSSDERSF APPMTLTFLS SVEKDNGGSR IGSPAGMDAS KGKDVVPNGT 60 QGGEHGLASG GKANVGRFKG KHSTVGGAAA DTAGDGFPNG KSSLAADDGD LKAHIVTERE 120 RRRRMKDLFS NLHALLPHVP EKVDKATLVG ETIDYIKALE QTKIWMEKRK QQQALARQAA 180 AEAAAVSSLS VPHTAQGLAA MLDNRGPVPQ QQPLAMAAAA APPLAAAMGP DGFQTWSAPN 240 VVLSVLNDKA VINMCLPRQP RILTLVMSVL NKHGIDVITA HVVADGARSF LTIYTRVS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do010032.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952702.1	1e-142	transcription factor bHLH95
TrEMBL	A0A1E5VW70	0.0	A0A1E5VW70_9POAL; Uncharacterized protein
STRING	Si017798m	1e-141	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	4e-16	bHLH family protein