PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do009658.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 707aa MW: 78524.8 Da PI: 5.0778

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009658.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	326.7	4.6e-100	328	700	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+a+++gd a++lL +++ ++sp+gd++qRla++f ++L+arla+++s++yk+l +++ s +e +a++l+ v+ + +++ N Do009658.1 328 LRTLLIHCAQAMATGDSLHATELLREIKRRSSPRGDATQRLAHCFGQGLEARLAGTGSQVYKSLMARRPS---AVEFHKAYRLYLTVCCFQMIAFKFSN 423 6789**********************************************************999998...89999***************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 I +a+ g ++vHi+D++ +G+QWp+Ll + + ++gpp+++iT+++ p++g + ++e+tg++L++fA+++gvpf+fn ++ ++e++ ++L++ Do009658.1 424 MIIWKAITGRKKVHIVDYGGHYGFQWPTLLGFFGTWKGGPPEVKITAIDLPQPGfrPAARVEQTGRQLSNFARQCGVPFKFNS-IVAKWETVYADDLSI 521 **************************************************99*************************.6999******* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 +p+E+l+Vn ++ +l+de ++++s +rd vL+ +++++P+v++++ +++++n++ F++rf eal yysa+fd+++a++pr++ er+ vE+ ++gr Do009658.1 522 EPDEVLIVNGLFHFGKLMDEGGDIDSpsPRDMVLRNIQKMRPDVFILCTENSSYNAPFFVTRFREALFYYSAMFDMMDATAPRDNAERVLVEQDIFGRC 620 *****************99998889****************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + n++aceg +r+er e ++kW+ r ++aG++++pl+ +++k ++ ++ + + + ++ ++++l++gWk+r L+++S W Do009658.1 621 ALNAIACEGLDRVERPEVYKKWQVRNDRAGLRELPLNLDIVKAVSKKVKDGYHKDFVIDVDQQWLLQGWKGRILYAMSTW 700 *********************************************999888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.737	302	681	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-97	328	700	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MAAGPEDVAD DPEPFSPSDF LDLPPTPRPD GDGGPVPRDD DDLVLPFITR VLMEEEDIDD 60 NDPDYPALLE AQQPFADILS DAAASSATKH SGFDSAAANT DGSVPVPLFP DAPAFANATW 120 PHDPVELSQM LLLSRTTHPD IGAISKQHGS SEFMPAGGGE DDDSLASTLF GGRNRVTMDM 180 LNQAFLKGME EANKFLPTTN SSLLMATSGE YLLPRDSKQP HVFFAGRQAK TTGMVDGVSI 240 FQEIAANGRG RKNRHTNWDN LEAETGRSCK LMAPETEEAS EVVDEFILNG YQSLVQSMRD 300 MSISTDREAK KNTRKGRGST NTDEAVDLRT LLIHCAQAMA TGDSLHATEL LREIKRRSSP 360 RGDATQRLAH CFGQGLEARL AGTGSQVYKS LMARRPSAVE FHKAYRLYLT VCCFQMIAFK 420 FSNMIIWKAI TGRKKVHIVD YGGHYGFQWP TLLGFFGTWK GGPPEVKITA IDLPQPGFRP 480 AARVEQTGRQ LSNFARQCGV PFKFNSIVAK WETVYADDLS IEPDEVLIVN GLFHFGKLMD 540 EGGDIDSPSP RDMVLRNIQK MRPDVFILCT ENSSYNAPFF VTRFREALFY YSAMFDMMDA 600 TAPRDNAERV LVEQDIFGRC ALNAIACEGL DRVERPEVYK KWQVRNDRAG LRELPLNLDI 660 VKAVSKKVKD GYHKDFVIDV DQQWLLQGWK GRILYAMSTW VAKDATS

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MAAGPEDVAD DPEPFSPSDF LDLPPTPRPD GDGGPVPRDD DDLVLPFITR VLMEEEDIDD  60
NDPDYPALLE AQQPFADILS DAAASSATKH SGFDSAAANT DGSVPVPLFP DAPAFANATW  120
PHDPVELSQM LLLSRTTHPD IGAISKQHGS SEFMPAGGGE DDDSLASTLF GGRNRVTMDM  180
LNQAFLKGME EANKFLPTTN SSLLMATSGE YLLPRDSKQP HVFFAGRQAK TTGMVDGVSI  240
FQEIAANGRG RKNRHTNWDN LEAETGRSCK LMAPETEEAS EVVDEFILNG YQSLVQSMRD  300
MSISTDREAK KNTRKGRGST NTDEAVDLRT LLIHCAQAMA TGDSLHATEL LREIKRRSSP  360
RGDATQRLAH CFGQGLEARL AGTGSQVYKS LMARRPSAVE FHKAYRLYLT VCCFQMIAFK  420
FSNMIIWKAI TGRKKVHIVD YGGHYGFQWP TLLGFFGTWK GGPPEVKITA IDLPQPGFRP  480
AARVEQTGRQ LSNFARQCGV PFKFNSIVAK WETVYADDLS IEPDEVLIVN GLFHFGKLMD  540
EGGDIDSPSP RDMVLRNIQK MRPDVFILCT ENSSYNAPFF VTRFREALFY YSAMFDMMDA  600
TAPRDNAERV LVEQDIFGRC ALNAIACEGL DRVERPEVYK KWQVRNDRAG LRELPLNLDI  660
VKAVSKKVKD GYHKDFVIDV DQQWLLQGWK GRILYAMSTW VAKDATS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-42	332	700	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009658.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002450068.2	0.0	scarecrow-like protein 14
TrEMBL	A0A1E5WF13	0.0	A0A1E5WF13_9POAL; Scarecrow-like protein 9
STRING	Sb05g027783.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-137	GRAS family protein