 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do009587.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
LBD |
| Protein Properties |
Length: 231aa MW: 23805.9 Da PI: 7.0778 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do009587.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 95 | 8.1e-30 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+q++a++
Do009587.1 2 SCNGCRVLRKGCSDACVLRPSIdwidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQAAADA 100
6*********************9999888899*****************************************************************99 PP
DUF260 95 allke 99
+l++e
Do009587.1 101 VLRGE 105
98776 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSDACVLR PSIDWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESLRAL STIPAAFTDR 120
DMDGLYGNVG VAASSASPEN SSSAPSKKRR AFNAAAAAAV PNSACQQQPP AGLLQSCELD 180
LCLTPASPMA GGRRGCGGGA SDEYSATTTC EDQGATGDLE ARAPALLNLF N
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 190 | 198 | GGRRGCGGG |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK288002 | 1e-147 | AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence. |
