PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009586.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 233aa    MW: 24358.5 Da    PI: 8.604
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009586.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-0579101123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cgk F+++  L  H ++H
  Do009586.1  79 HRCSICGKAFPSHQALGGHKSSH 101
                 79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01379101IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.52E-979101No hitNo description
PfamPF139121.3E-1079102IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.92879106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.52E-9140167No hitNo description
PfamPF139124.1E-14144169IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349145167IPR007087Zinc finger, C2H2
SMARTSM003550.12145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAAMAVEAAL DAAATPWPRR QQEGDEEGPS SAQARRKRSR RHLLRAPTEE EQLALCLLML  60
ARGQRDVVRG AATSPAQEHR CSICGKAFPS HQALGGHKSS HRTSRAPAAP TQVAAAAQEP  120
APATPAPSAS PAASSSTSCG GSRVHECSVC KKTFPTGQAL GGHKRCHYEG GSGATNIAST  180
STGTGFSRGF DLNIPALPDM IITAADRCMP AADEEEEVLS PLAFKKPRLM ILA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1355005e-32AC135500.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBa0034J04 map S1466, complete sequence.
GenBankAC1369725e-32AC136972.3 Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence.
GenBankAK2879435e-32AK287943.1 Oryza sativa Japonica Group cDNA, clone: J075021K20, full insert sequence.
GenBankAP0149595e-32AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY2891895e-32AY289189.1 Oryza sativa (japonica cultivar-group) zinc finger transcription factor OsZFP34 mRNA, complete cds.
GenBankAY3058685e-32AY305868.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP31 (ZFP31) mRNA, complete cds.
GenBankCP0126115e-32CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankEU7178395e-32EU717839.1 Oryza sativa Indica Group cultivar PA64s C2H2 zinc finger (zf) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794414.11e-76zinc finger protein 1-like
SwissprotQ424308e-50ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A1E5W0L51e-166A0A1E5W0L5_9POAL; Zinc finger protein AZF2
STRINGPavir.J15423.1.p1e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.18e-34salt tolerance zinc finger