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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do009544.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
ERF |
Protein Properties |
Length: 203aa MW: 21736.5 Da PI: 10.4393 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do009544.1 | genome | Dichan | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 61.4 | 2e-19 | 4 | 53 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++ a+++++g
Do009544.1 4 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAAAYDDAALRFKG 53
7********.**********83....36************************988 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 203 aa
Download sequence Send
to blast |
MRRHYRGVRR RPWGKWAAEI RDPAKAARVW LGTFDTAEAA AAAYDDAALR FKGAKAKLNF 60 PERVRGRTGQ GTFLVTPGVP QPPPPVSAPL PPSLLPVPTA VAPFPDLMRY AQLLQGANSR 120 NIVVASNADD LAPPAQASSS VQILDFSTQQ LLRGSPTTFG RQSTTSASMS TTTSSSPSMW 180 PHVEARTSGV DEANDESCKA PPD
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005749 | 2e-86 | AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17. |
GenBank | AP005842 | 2e-86 | AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22. |
GenBank | AP014958 | 2e-86 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | CP012610 | 2e-86 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
GenBank | CT831330 | 2e-86 | CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence. |