PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 374aa MW: 37943 Da PI: 7.5927

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009449.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.4e-32	80	133	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Do009449.1 80 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 133 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.32E-16	78	134	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-29	78	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	80	133	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-8	81	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0080060	Biological Process	integument development
GO:0005618	Cellular Component	cell wall
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MSTEPSTAPF AEGSGEVGFF ANPSPGAEPP GLSLGLGTAP AHGGDAAGRR GHLEPQGCAF 60 KRAASRASLP GGSKRSARAP RMRWTTALHA RFVHAVELLG GHERATPKSV LELMNVKDLT 120 LAHVKSHLQM YRTVKSTDRS LHIATGEALP LQRTATVMEA AAAAGGGAAA AAGGGVVVVP 180 VTAACDDIVG ICSSPSAGSA PPAAATTSAA HFLCAPPATA PLAVAPAPPP PIPPRTDHAA 240 AVLEKGVAAA VDSAHRCQKH NFSPPLLQDA QVTAMSGLID IWTVERERMV RTRGVQAFRS 300 VASLGASARQ VSMARSESDG SSSSEHKTCC DGVGAPGGVV VMDAAEKQAA ADGGAPEFVR 360 EDAFLSILVD CFGQ

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MSTEPSTAPF AEGSGEVGFF ANPSPGAEPP GLSLGLGTAP AHGGDAAGRR GHLEPQGCAF  60
KRAASRASLP GGSKRSARAP RMRWTTALHA RFVHAVELLG GHERATPKSV LELMNVKDLT  120
LAHVKSHLQM YRTVKSTDRS LHIATGEALP LQRTATVMEA AAAAGGGAAA AAGGGVVVVP  180
VTAACDDIVG ICSSPSAGSA PPAAATTSAA HFLCAPPATA PLAVAPAPPP PIPPRTDHAA  240
AVLEKGVAAA VDSAHRCQKH NFSPPLLQDA QVTAMSGLID IWTVERERMV RTRGVQAFRS  300
VASLGASARQ VSMARSESDG SSSSEHKTCC DGVGAPGGVV VMDAAEKQAA ADGGAPEFVR  360
EDAFLSILVD CFGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	81	135	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00107	PBM	Transfer from AT5G42630	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009449.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065124	1e-116	BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981643.1	1e-116	probable transcription factor RL9
TrEMBL	A0A1E5VYW7	0.0	A0A1E5VYW7_9POAL; Putative transcription factor KAN4
STRING	Si036187m	1e-116	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	2e-37	G2-like family protein