PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 374aa MW: 37943 Da PI: 7.5927 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.4e-32 | 80 | 133 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Do009449.1 80 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 133 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.32E-16 | 78 | 134 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-29 | 78 | 134 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 80 | 133 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-8 | 81 | 132 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005618 | Cellular Component | cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MSTEPSTAPF AEGSGEVGFF ANPSPGAEPP GLSLGLGTAP AHGGDAAGRR GHLEPQGCAF 60 KRAASRASLP GGSKRSARAP RMRWTTALHA RFVHAVELLG GHERATPKSV LELMNVKDLT 120 LAHVKSHLQM YRTVKSTDRS LHIATGEALP LQRTATVMEA AAAAGGGAAA AAGGGVVVVP 180 VTAACDDIVG ICSSPSAGSA PPAAATTSAA HFLCAPPATA PLAVAPAPPP PIPPRTDHAA 240 AVLEKGVAAA VDSAHRCQKH NFSPPLLQDA QVTAMSGLID IWTVERERMV RTRGVQAFRS 300 VASLGASARQ VSMARSESDG SSSSEHKTCC DGVGAPGGVV VMDAAEKQAA ADGGAPEFVR 360 EDAFLSILVD CFGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-16 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-16 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-16 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-16 | 81 | 135 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00107 | PBM | Transfer from AT5G42630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009449.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065124 | 1e-116 | BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981643.1 | 1e-116 | probable transcription factor RL9 | ||||
TrEMBL | A0A1E5VYW7 | 0.0 | A0A1E5VYW7_9POAL; Putative transcription factor KAN4 | ||||
STRING | Si036187m | 1e-116 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6554 | 37 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 2e-37 | G2-like family protein |