PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do009435.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 444aa MW: 48435.1 Da PI: 5.5208 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.8 | 2.5e-33 | 241 | 295 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFv+av+qLGGsekAtPk +l+lmk + Lt++hvkSHLQkYR+ Do009435.1 241 KARMRWTPELHERFVDAVNQLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRT 295 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.241 | 238 | 298 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-31 | 239 | 297 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-17 | 240 | 295 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 241 | 295 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-10 | 243 | 294 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-21 | 325 | 369 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 444 aa Download sequence Send to blast |
MERLSTNQLY NSGVPVTVPT SLPSITVSLE DTFPRLPDSQ NVLIDRELRS TPLPPRQTTA 60 APIRGQFHSS TGSVGPLCSP PALRFSSVSN PEQYSNPSPY NAQAPSTASS STLNYGSQYG 120 GFEPSLTDFP RDVEPTWCPD PVDNILGYPG DVPGGNNLTG STSIGASDDL TKQTEWWTEL 180 MSDDWKDIVD NPAFAETQQV GQPAQSSMSV QSATQQTVSS QSGEPLAVVA PSPTAGSNTA 240 KARMRWTPEL HERFVDAVNQ LGGSEKATPK GVLKLMKADN LTIYHVKSHL QKYRTARYRP 300 ELSEGSSEKK VASKEDIPDL KGSFDLTEAL RLQLELQKRL HEQLEIQRSL QLRIEEQGKC 360 LQMMLEQQCI PGTEKAANAS TSAEGSKLSS EIPESSTVKE VPETSQNGLT KQTGMRKAFA 420 CGDTGFMITR HRSLMAPAFG FRIR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-30 | 240 | 299 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis. PHR2 binding to DNA is repressed redundantly by SPX1, SPX2 and SPX4 in a PI-dependent manner. {ECO:0000250|UniProtKB:Q6Z156}. | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:25657119, PubMed:26082401). Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). Involved in both systematic and local Pi-signaling pathways (PubMed:19704822). Regulates several Pi transporters (PubMed:18263782). Regulates the expression of PT2 (PubMed:20149131). Directly up-regulates SPX1 and SPX2 expression, but PHR2 binding to DNA is repressed redundantly by SPX1 and SPX2 in a PI-dependent manner (PubMed:25271318). The DNA-binding activity is also repressed by SPX4 (PubMed:24692424). Involved in root growth under Pi deprivation (PubMed:18263782). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:19704822, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:24692424, ECO:0000269|PubMed:25271318, ECO:0000269|PubMed:25657119, ECO:0000269|PubMed:26082401}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do009435.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by Pi starvation. {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT067745 | 0.0 | BT067745.1 Zea mays full-length cDNA clone ZM_BFc0148N18 mRNA, complete cds. | |||
GenBank | BT069467 | 0.0 | BT069467.1 Zea mays full-length cDNA clone ZM_BFb0146B10 mRNA, complete cds. | |||
GenBank | KJ726879 | 0.0 | KJ726879.1 Zea mays clone pUT3420 G2-like transcription factor (GLK15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956084.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 2 isoform X1 | ||||
Swissprot | B8B5N8 | 0.0 | PHR2_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
Swissprot | Q6Z156 | 0.0 | PHR2_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
TrEMBL | A0A1E5VZ99 | 0.0 | A0A1E5VZ99_9POAL; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
STRING | Si029945m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1971 | 37 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-69 | phosphate starvation response 1 |