PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB

Protein Properties

Length: 288aa MW: 30928.7 Da PI: 6.3044

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009279.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8.1e-16	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l d++ ++G g+W+t + + g+ R +k+c++rw +yl Do009279.1 15 KGLWSPEEDEKLRDYILRHGHGCWSTLPVKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	52.8	8.9e-17	69	113	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e ++++lG++ W+ Iar+++ gRt++++k++w++yl Do009279.1 69 GMFSREEEETVMSLHAKLGNK-WSQIARHLP-GRTDNEVKNYWNSYL 113 56999**************.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-21	10	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.162	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.6E-28	13	109	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-10	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	7.6E-13	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	6.79E-10	18	62	No hit	No description
PROSITE profile	PS51294	25.448	63	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-25	66	116	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-14	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-15	69	113	IPR001005	SANT/Myb domain
CDD	cd00167	2.57E-12	71	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0010018	Biological Process	far-red light signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGCKACQKPK VQYRKGLWSP EEDEKLRDYI LRHGHGCWST LPVKAGLQRN GKSCRLRWIN 60 YLRPGLKHGM FSREEEETVM SLHAKLGNKW SQIARHLPGR TDNEVKNYWN SYLKKRVEGG 120 AQAKCAADPA TPAGSDARAG SPNPSDSGGQ ERLNRPASSD SSEPVESSSA DDSSCLTVTE 180 PAGAGAAVRP HAPVLPKVMF ADWLDMDYGT SLVALGPDAG VFDVMSGRSL SHQGSSVQVD 240 GPCGVVDSLH GLGDGGMCWG FDTAADQMDV EGGGFCDLLS MSEFLGIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-24	15	118	7	109	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269\|PubMed:11581165, ECO:0000269\|PubMed:19482971}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009279.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091592	1e-158	FP091592.1 Phyllostachys edulis cDNA clone: bphylf055c23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823961.1	0.0	transcription factor LAF1-like
Swissprot	Q9M0K4	5e-60	LAF1_ARATH; Transcription factor LAF1
TrEMBL	A0A1E5W123	0.0	A0A1E5W123_9POAL; Transcription factor LAF1
STRING	Si012304m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1707	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25560.1	7e-59	myb domain protein 18

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]