PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009211.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 231aa    MW: 23891.6 Da    PI: 4.1906
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009211.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82.1e-162573355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykGVr ++ +g+Wv+e+r p   g+++r++lg++ tae Aa+a++aa ++l+g
  Do009211.1 25 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 73
                9****998.*******9998...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.6662483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-262483IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-162484IPR016177DNA-binding domain
SMARTSM003808.4E-282489IPR001471AP2/ERF domain
PfamPF008474.0E-102573IPR001471AP2/ERF domain
PRINTSPR003672.9E-82536IPR001471AP2/ERF domain
CDDcd000183.95E-142584No hitNo description
PRINTSPR003672.9E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVKTATASND ATALAAARHG AKRTYKGVRM RSWGSWVSEV RAPGQKTRIW LGSHSTAEAA  60
ARAYDAALLC LKGSAAAADL NFPIRLPFDL PPAAMSPKAI QRVAAAAAAA SSGGADLAAC  120
ADDNVDSACS GTTTLAWSSG SPSEASAVSS PESTVSSESD LAAALYGDDD VDYSSLADID  180
AFFQSPKCME YAMMDPCSAF FAPAAPMAMD DACCWEEEGD IALWSFSTLD C
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009211.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046871e-84AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149621e-84AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-84CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964908.11e-107ethylene-responsive transcription factor ERF014
TrEMBLA0A1E5WA751e-162A0A1E5WA75_9POAL; Uncharacterized protein
STRINGSi007977m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.12e-23ERF family protein