PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009114.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 431aa    MW: 47918.6 Da    PI: 6.2417
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009114.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.8e-21131231186
    trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                 +Wt ++v++L+ +++++++++  +               +kk++W+ vs++m erg  +sp+qC++k+++lnkryk+++e+ +++ +++ +++ ++++q
  Do009114.1 131 KWTGDMVMLLVSIVSYIDDDVDGDHgagsggrkrkqamlKKKGKWRMVSSAMTERGHPVSPQQCEDKFNDLNKRYKRVTEILGRGtACKIVEKPVLLEQ 229
                 7**************9999998654456677888899999*********************************************55999999999999 PP

    trihelix  85 le 86 
                 ++
  Do009114.1 230 MN 231
                 96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-19129256No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAAQPQAVQA PHDAPAAPAA NQMMPELGNV VKASLSSEKD APAAXQKMPE VGSVVNASLS  60
SEEDAPAANQ KMPEVGSVVN ASLSSEEDAP VTNQKMPEVE NVVKASLSNE ENADDGGGKG  120
AALASQWHRV KWTGDMVMLL VSIVSYIDDD VDGDHGAGSG GRKRKQAMLK KKGKWRMVSS  180
AMTERGHPVS PQQCEDKFND LNKRYKRVTE ILGRGTACKI VEKPVLLEQM NLSGNHKEEA  240
KKYLSSKHLH YEQMCSYHNH NRQCLLKDPA LQRSQRMALR SPDGQGKKHS LDDEDNQMLI  300
SDDDKEDNGF DDDLEVGAED HRHHTVHGTK NLKHDHEGGT GGSAVQKNPT GMNATQVDRD  360
CLKIKGDMLE IEHSHLEWLK VRKEEDMELQ KMKLENERMK LENERTKLEN ERLELQLKLK  420
ETEMGIKSNR I
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806041.11e-141uncharacterized protein LOC112884725
TrEMBLA0A1E5W1H80.0A0A1E5W1H8_9POAL; Uncharacterized protein
STRINGSi030145m1e-140(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-62sequence-specific DNA binding transcription factors