PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do009078.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 272aa MW: 29783.3 Da PI: 6.923

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009078.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.1	6.2e-31	42	95	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprl+WtpeLHerFveav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQ R Do009078.1 42 KPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRVMGIPGLTLYHLKSHLQVQR 95 79*************************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.646	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-28	40	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-15	41	96	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-22	42	96	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	44	93	IPR001005	SANT/Myb domain
Pfam	PF14379	3.4E-12	86	117	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MYHQQQLHGH SQHLSSRPGL PPEKQFLLQG GDAGLVLSTD AKPRLKWTPE LHERFVEAVH 60 QLGGPDKATP KTIMRVMGIP GLTLYHLKSH LQVQRHLQLR IEAQGKYLQS VLEKAQEALA 120 KQSVDLDGGV LGTAAAAETQ QLSELISRAS ATKRVQHEHL HHQHLGGVGD GSVDSCLTAC 180 DGSQSQRDHD MLSIGLSPAP TPRGGCPFEA ARSGNDRRGA STGCEEFLFL EEPGRRGSSS 240 DEQQELDLNI NDRNTPRPRN CEKIDLNGSS WN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	41	100	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009078.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679461	1e-101	HF679461.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB55 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803979.1	1e-102	myb-related protein 1-like isoform X1
Refseq	XP_025803980.1	1e-102	myb-related protein 1-like isoform X2
Swissprot	Q9FK47	1e-38	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1E5WGV3	0.0	A0A1E5WGV3_9POAL; Myb family transcription factor APL
STRING	Si030350m	4e-98	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20987	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	9e-44	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]