PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008837.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 21980.6 Da    PI: 5.4081
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008837.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.3e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Do008837.1  9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59
                79*********************************************9986 PP
2K-box59.31.7e-20641471699
       K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   + ++a+L++++ +    +R++ Ge+Le Ls++eLqqLe++Le +l ++ ++K++ +leqi++lq+k  +l een++Lr+++ 
  Do008837.1  64 LEHSKYANLNEQLAEASLRLRQMRGEELEGLSVEELQQLEKNLEAGLHRVLQTKDQQFLEQISDLQRKSSQLAEENMQLRNQVS 147
                 45678899999999999999************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.483161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-26171IPR002100Transcription factor, MADS-box
CDDcd002651.52E-32260No hitNo description
PRINTSPR004045.8E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.26162152IPR002487Transcription factor, K-box
PfamPF014869.3E-1967146IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS  60
RHVLEHSKYA NLNEQLAEAS LRLRQMRGEE LEGLSVEELQ QLEKNLEAGL HRVLQTKDQQ  120
FLEQISDLQR KSSQLAEENM QLRNQVSQIP PAGKQAVADT ENVITEDGQS SESVMTALHS  180
GSSQDNDDGS DVSLKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18169172MEF2C
5f28_B5e-18169172MEF2C
5f28_C5e-18169172MEF2C
5f28_D5e-18169172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008837.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354201e-164BT035420.1 Zea mays full-length cDNA clone ZM_BFb0060F04 mRNA, complete cds.
GenBankKJ7269231e-164KJ726923.1 Zea mays clone pUT3468 MADS transcription factor (MADS73) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810223.11e-127MADS-box transcription factor 22
SwissprotQ9XJ661e-114MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A3L6RPX91e-126A0A3L6RPX9_PANMI; MADS-box transcription factor 22
STRINGSb04g033930.11e-126(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]