PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008721.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 293aa    MW: 32845.4 Da    PI: 9.1557
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008721.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.6e-055979323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C+ C ++F + + L  H+r+H
  Do008721.1 59 CQLCFRVFASCYALSAHMRVH 79
                *******************99 PP
2zf-C2H2171.7e-05201223123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C+ Cgk+F+++  L +H + H
  Do008721.1 201 HDCKLCGKVFTSSKGLASHKKFH 223
                 56******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.865779IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.645784IPR007087Zinc finger, C2H2
SuperFamilySSF576676.51E-75879No hitNo description
PfamPF138944.0E-45879No hitNo description
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576676.51E-7196223No hitNo description
SMARTSM003550.033201223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4201223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845201223IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNLHSVKRKH KKKARSTLSL PNIVAGAGGY GLRERRHSAW LSCDSSDDEY LTRVPKTACQ  60
LCFRVFASCY ALSAHMRVHV RHERKMVAKE ASRESNGYCD HNVDVSTPVK LTYGIQEVNA  120
ARVLLMISGH CGMDSPSEHC DEDYEIDGNL AYRVQKSEME LDYSCHGRTG DAELMMPESP  180
CSDVKPKFSS LSQVLKATET HDCKLCGKVF TSSKGLASHK KFHKVPDREK VAGPRNSAVP  240
QTGQKLLEVD SRLLCLNLPG FSDRNYRSRN PKSAQTPWWT ARGFRSERLL GIV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796823.11e-177uncharacterized protein LOC112876858
RefseqXP_025796824.11e-177uncharacterized protein LOC112876858
TrEMBLA0A1E5W5530.0A0A1E5W553_9POAL; Uncharacterized protein
STRINGPavir.Ib03920.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921