PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do008538.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

HB-other

Protein Properties

Length: 1047aa MW: 117693 Da PI: 6.6961

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008538.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.1	3.5e-14	16	68	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ +++q++ Le+++ +yp+ ee+ + A+ +gLt +qV++WF+ rR ke++ Do008538.1 16 TKKSPQQIQMLEKFYSDVQYPKPEEMGQYATCVGLTYSQVRIWFKERRRKERR 68 66799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.722	9	69	IPR001356	Homeobox domain
SMART	SM00389	4.0E-14	11	73	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.74E-13	12	73	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-11	16	68	IPR001356	Homeobox domain
CDD	cd00086	4.74E-8	16	59	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.9E-14	16	74	IPR009057	Homeodomain-like
PROSITE profile	PS50827	9.393	298	357	IPR018501	DDT domain
SMART	SM00571	1.3E-4	298	357	IPR018501	DDT domain
Pfam	PF02791	7.0E-7	301	352	IPR018501	DDT domain
Pfam	PF15612	2.5E-5	539	567	IPR028942	WHIM1 domain
Pfam	PF15613	1.3E-11	659	730	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
QMVTNVLGAK RENAGTKKSP QQIQMLEKFY SDVQYPKPEE MGQYATCVGL TYSQVRIWFK 60 ERRRKERREM ETIGSHMERQ LSARSSGPRS SSSSSSCNQA PMYGISSRPE FDSRSTSIVG 120 EESTVKSQIL FPKDYILRKI FRKDGPPLGS EFEPLPQSER GRIRALAIHK SSLVPLNMQN 180 QGLSQKKVGK RTKPPSNKRK VPCKRVTGPK EHPLMDCHLS VDKSESSELL TEQVTLVDDE 240 ELELSELQEG PNPLRCSAHL SSSGRHGCPL CKDLLAKFPP QSVKMKQPFS TKPWDSSPEM 300 VKKHFQVVRF VYAHFGSIDV HPFTFDEFAQ AFHDKDSLLL GEVHIGLLKL LLLNAEMGSG 360 GVFAPRSSKD CRFLSFLNFV REQEFDVNFW IRSLNSLTWV EILRQVLVAS GFGSKQHMLN 420 RDFFNKIVDL NVSGTLELEQ LICLTLSSDI TLFEKIAPSA YRLRVDPQIK GKEDARSDSE 480 DSGSVDDEDD ASSSDDESNG SQKMILPGHD TRIARKKNQK NAHGSPNKCS EIDESYPGER 540 WLLGLMEGEY SDLSIDEKLD CLVALIDILS GAGSVPRLEE PHRVLHNMPR VQQHQSGGKI 600 RKSTKNLYQS NDESFNGPGN SYSLNCSQQG RSASRRNQDY IIDSGRNELS GVAHGPQVVH 660 LGSDRRYNSY WLFLGPCRAD DPGHRRVYFE SSEDGHWEVV DSPQELLSLL AVLDSRGTRE 720 AHLLASMEKR QACLFKAMKK HVEGGDAVGL PASSDSFRSE TSTGDGASPK TSSVSGASPV 780 SDVENVSVPT DLEDSNLDSS SAIVIESGRS GDERILMWDR LQAFDKWIWT SFYSVLTAVK 840 CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVGFDL EERYAVHVAT CREPEDAHDV 900 PNHKVLPSQL QALKAAIHAI EALMPEAAFT GSWMKSAHKL WVKRLRRTSS LPELLQVLID 960 FVGAIDEDWL YKSSSSVSFS SYLDDIIVYF QTMPQTTSAV ALWVVKLDAL IAPYLDKDNT 1020 SRVIKEPTQT INAFWYFLQS CLWEITI

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

QMVTNVLGAK RENAGTKKSP QQIQMLEKFY SDVQYPKPEE MGQYATCVGL TYSQVRIWFK  60
ERRRKERREM ETIGSHMERQ LSARSSGPRS SSSSSSCNQA PMYGISSRPE FDSRSTSIVG  120
EESTVKSQIL FPKDYILRKI FRKDGPPLGS EFEPLPQSER GRIRALAIHK SSLVPLNMQN  180
QGLSQKKVGK RTKPPSNKRK VPCKRVTGPK EHPLMDCHLS VDKSESSELL TEQVTLVDDE  240
ELELSELQEG PNPLRCSAHL SSSGRHGCPL CKDLLAKFPP QSVKMKQPFS TKPWDSSPEM  300
VKKHFQVVRF VYAHFGSIDV HPFTFDEFAQ AFHDKDSLLL GEVHIGLLKL LLLNAEMGSG  360
GVFAPRSSKD CRFLSFLNFV REQEFDVNFW IRSLNSLTWV EILRQVLVAS GFGSKQHMLN  420
RDFFNKIVDL NVSGTLELEQ LICLTLSSDI TLFEKIAPSA YRLRVDPQIK GKEDARSDSE  480
DSGSVDDEDD ASSSDDESNG SQKMILPGHD TRIARKKNQK NAHGSPNKCS EIDESYPGER  540
WLLGLMEGEY SDLSIDEKLD CLVALIDILS GAGSVPRLEE PHRVLHNMPR VQQHQSGGKI  600
RKSTKNLYQS NDESFNGPGN SYSLNCSQQG RSASRRNQDY IIDSGRNELS GVAHGPQVVH  660
LGSDRRYNSY WLFLGPCRAD DPGHRRVYFE SSEDGHWEVV DSPQELLSLL AVLDSRGTRE  720
AHLLASMEKR QACLFKAMKK HVEGGDAVGL PASSDSFRSE TSTGDGASPK TSSVSGASPV  780
SDVENVSVPT DLEDSNLDSS SAIVIESGRS GDERILMWDR LQAFDKWIWT SFYSVLTAVK  840
CGKKSFKESL VRCESCHDLY WRDEKHCRIC HSTFEVGFDL EERYAVHVAT CREPEDAHDV  900
PNHKVLPSQL QALKAAIHAI EALMPEAAFT GSWMKSAHKL WVKRLRRTSS LPELLQVLID  960
FVGAIDEDWL YKSSSSVSFS SYLDDIIVYF QTMPQTTSAV ALWVVKLDAL IAPYLDKDNT  1020
SRVIKEPTQT INAFWYFLQS CLWEITI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	68	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008538.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661208.1	0.0	homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	A0A3L6TQS0	0.0	A0A3L6TQS0_PANMI; Uncharacterized protein
STRING	Si033977m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-148	Homeodomain-like transcriptional regulator