PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008448.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 494aa    MW: 52527 Da    PI: 6.6766
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008448.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.42.3e-751324932374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                 v+ Lle+A+  +sgd + a+++Larl+++     p g  p+ R+aa++  AL + l+       +al p s +s+ +++ +laa+k++ ++sP+++f+ 
  Do008448.1 132 VDELLEAARRADSGDSTGAREILARLNHRlpsPPPPGhPPLLRAAAHLRDALLRLLVT-----PAALpPGSVSSPLDVALKLAAHKALADASPTVQFAS 225
                 678*************************986534455479**************9998.....44452555566667********************** PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                 +t  qa+l+a+  ++rvH++D+d++ G+ Wp+L+q+La +        +pps+++T+++sp s +  el+ t+e L++fA+ lg++fef+++v + l+ 
  Do008448.1 226 FTSTQALLDALGAARRVHVVDLDVGFGARWPPLMQELALQWrrasaqLPPPSMKVTALVSPGSAHPLELHLTHESLTHFAAGLGIRFEFKAVVFDPLDP 324
                 **************************************5432346555699************************************************ PP

        GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                  ++ + +  pgEa+aV+l +   +            +++L++vk+l+P +vv+v++ + +++ ++ ++ l  ++  +a+++sl+a  ++++++ +kvE+
  Do008448.1 325 STPVAVSAAPGEAVAVHLPIGSGTSS--------SAPATLRVVKQLRPAIVVCVDHGCHRDDLPLSRHALTVVRSSAAFLESLDAA-GATEDAVAKVEQ 414
                 ********************666654........3578*********************************************999.8999******** PP

        GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +l+++++ ++             +  W+ ++ +aGF pv+ls+ a++qa++++r+++   g++ve+++ +lvl W++ +Lv+vSaWr
  Do008448.1 415 YILRPRVERLLLGDR---------MPPWQTMFASAGFAPVQLSSAAEAQAECIVRRTPtPAGFHVEKRQTALVLRWQQSELVTVSAWR 493
                 *********998654.........56********************************99***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.839105472IPR005202Transcription factor GRAS
PfamPF035148.0E-73132493IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSKLQDDARA GNGQHQAAAS PAKRLRKEPT SVLYNRSPSP PTSSSLASSS APEPPPISAE  60
DWEAVLSGGM GAPPAAAPSQ DSCCFLRWIM DADAQVDAFD PFLLLEPNVE PFSLQPQPPL  120
PVADDLEPRP VVDELLEAAR RADSGDSTGA REILARLNHR LPSPPPPGHP PLLRAAAHLR  180
DALLRLLVTP AALPPGSVSS PLDVALKLAA HKALADASPT VQFASFTSTQ ALLDALGAAR  240
RVHVVDLDVG FGARWPPLMQ ELALQWRRAS AQLPPPSMKV TALVSPGSAH PLELHLTHES  300
LTHFAAGLGI RFEFKAVVFD PLDPSTPVAV SAAPGEAVAV HLPIGSGTSS SAPATLRVVK  360
QLRPAIVVCV DHGCHRDDLP LSRHALTVVR SSAAFLESLD AAGATEDAVA KVEQYILRPR  420
VERLLLGDRM PPWQTMFASA GFAPVQLSSA AEAQAECIVR RTPTPAGFHV EKRQTALVLR  480
WQQSELVTVS AWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2617449342375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9743700.0EU974370.1 Zea mays clone 447391 scarecrow-like 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810594.10.0scarecrow-like protein 6
TrEMBLA0A1E5W9D90.0A0A1E5W9D9_9POAL; Scarecrow-like protein 6
STRINGGRMZM2G051785_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-67GRAS family protein