 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do008257.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
C2H2 |
| Protein Properties |
Length: 511aa MW: 55882.5 Da PI: 5.6063 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do008257.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 19.8 | 2.2e-06 | 282 | 303 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C +Cgk F+r nL+ H+r H
Do008257.1 282 FCLICGKGFKRDANLRMHMRGH 303
5*******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010044 | Biological Process | response to aluminum ion |
| GO:0010447 | Biological Process | response to acidic pH |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 511 aa
Download sequence Send
to blast |
MEMEGGMSSL ETAMKASSSM ASGTARNADP DQQTIRSNSV EQFYFPRPGQ SLPGIPSFFG 60
PPSSSLYLPN DNEAKVGNQF EPNPSQNTDW DPQAIVSNLT FLEQKIKQVK DIVQAMSNRE 120
NQVAGGSCEL AAKQQLITAD LTSIIIQLIT TAGSLLPSMK NPLLSSNPAV RQLSNTLGSP 180
MGFGVNTDQR PSIDSKTDGP DTGKASGYEE LINSLNTTQD ERDELIKCPN PCGGEGSEPT 240
PMEDHDVKES DDGDHEGENL PPGSYVVLQL EKEEILAPHT HFCLICGKGF KRDANLRMHM 300
RGHGDEYKTA AALAKPTKDS GSEHAPVTRY SCPFVGCKRN KEHKKFQPLK TILCVKNHYK 360
RSHCDKSYTC SRCNTKKFSV IADLKTHEKH CGRDKWLCSC GTNFSRKDKL FGHVALFQGH 420
TPALPMDDVK VSEASEQPQG SEPMACFPCS SSDGISNLDM KMADDARGYY SPLSFDPCFG 480
ALDDFTRPGF DISEDPFSFL PSGSCSYGQQ N
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF184734 | 0.0 | KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence. |
| GenBank | KF184941 | 0.0 | KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence. |
