PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do008117.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 121aa MW: 12985.7 Da PI: 5.6263

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008117.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.9e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F ++ L H++ H Do008117.1 81 FSCTYCDKKFYSSQALGGHQNAH 103 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.86E-7	69	116	No hit	No description
PROSITE profile	PS50157	11.385	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MEQHSTLIIP PASSEITTPP ILSPPLGLGR LRLCPAVLSL DAMDPSSEGR GGGEGDLDLD 60 LDLNLSLQPS LAPDPEPPGY FSCTYCDKKF YSSQALGGHQ NAHKFERSVA KRARELAAAR 120 R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008117.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968700	3e-44	EU968700.1 Zea mays clone 323547 zinc finger protein 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803137.1	3e-49	zinc finger protein 2-like
TrEMBL	A0A1E5W4T1	6e-82	A0A1E5W4T1_9POAL; Uncharacterized protein (Fragment)
STRING	Pavir.Bb02239.1.p	4e-47	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	8e-14	zinc finger protein 2