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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C3H | ||||||||
Protein Properties | Length: 685aa MW: 73391 Da PI: 5.1577 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.7 | 2e-08 | 479 | 500 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++ +G C +GdrCkF+H+ Do008082.1 479 ECHNYKNNGMCIRGDRCKFSHV 500 6********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.971 | 420 | 447 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-4 | 421 | 446 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-5 | 422 | 445 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.549 | 449 | 476 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 449 | 475 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 450 | 474 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.023 | 477 | 501 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.53 | 479 | 502 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 479 | 500 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 480 | 499 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MEDALAPSPA APPPAPIAAA AVLNRRRSHL DSASYRTLSR LFSHCLHLHP SPREGTAPPE 60 AEPAAAKPIG IGGDSGDYSQ VPGGANFDRL KDVEKEAADA GGPLLHGTVS PAREQPAAAN 120 PTGDPCEAQA PQCLLQDVDE VVALESTCGN TGAGGEESGI GAELVVAEDD ALKLVTACLE 180 MTEIDESVEG AVGDDDGQLL LDAMMTNFTG LIDDVGDGVI PAQTCVVSGG ERQNSKASED 240 SKQSGGGIEN RESVSNLDCE LNNDGGFEEG EIEGYFQDLD SEESGDSEFG DDDAEDEKLG 300 GDSVSRGSGA NESCDHGTRF ENLHSTPEII GNGHLIFDKH PNVRGDAQIS VTRAQAVSYD 360 EVVDWNETPL PDNEAPNSGK KRKRPLTEER KAKKKKNSRM KRAQKRIADG VKRPKLEPVI 420 KPKKPCRFYD HGKCQQGNKC KFSHDFTPST KSMPCKHFAC GSCLKGDDCP YDHELSKYEC 480 HNYKNNGMCI RGDRCKFSHV MRTTEGTPTQ GAKTSDASLA YEKTNLREHT SSQKTSTVRN 540 VEPVSSAPTK QQCSILKNLA GFSINSQNVS NRIPKGVQFL PIGKSGSNLS SPHPDALSIE 600 KHLNANGTQH QYLGGHEAER QKIVKQNGQA LLDEKNSSNE ATTQPCLDPK KASLPITSTA 660 TSVHTQHEVS EASRILQEFL FGAGS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 381 | 395 | RKRPLTEERKAKKKK |
2 | 382 | 395 | KRPLTEERKAKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008082.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817940.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_025817941.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Refseq | XP_025817942.1 | 0.0 | zinc finger CCCH domain-containing protein 7 | ||||
Swissprot | Q657B3 | 0.0 | C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A1E5UVI4 | 0.0 | A0A1E5UVI4_9POAL; Zinc finger CCCH domain-containing protein 7 | ||||
STRING | Pavir.Eb02489.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8838 | 37 | 43 |
Publications ? help Back to Top | |||
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