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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 24638.7 Da PI: 4.8634 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr ++ +g+Wv+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g Do007975.1 36 PYKGVRMRS-WGSWVSEIRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 85 59****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-34 | 36 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-29 | 36 | 94 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.997 | 36 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 37 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.13E-19 | 37 | 94 | No hit | No description |
PRINTS | PR00367 | 5.3E-8 | 37 | 48 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 37 | 95 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-8 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVKNTSNGVA TATAFSDDKA RPESGVVGGN KAAARPYKGV RMRSWGSWVS EIRAPNQKRR 60 IWLGSYATPE AAARAYDAAL LCLKGSDAVL NFPASSSSPS SPHRVDTXHS DPASSGAMSP 120 RSIQRAAAAA AAAFDAGLSV SVDDMCSSSA GATIPTSAAS ASQLSTLCSA XHVQEHATSS 180 SAAASTGSPA EEDELWTDLD AFASPKFMDL MAAGAAPFSS TWEDPEDDGE VMRLWSFC |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007975.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727660 | 4e-85 | KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795709.1 | 1e-115 | ethylene-responsive transcription factor ERF014-like | ||||
TrEMBL | A0A1E5V864 | 1e-167 | A0A1E5V864_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03856.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10830 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 2e-24 | ERF family protein |