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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do007897.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
NAC |
Protein Properties |
Length: 182aa MW: 20707.1 Da PI: 8.605 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do007897.1 | genome | Dichan | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 172.1 | 1.7e-53 | 12 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eek..ewyfFskrdkkyatgkrknratksgyWkatgkd 89
+ppGfrFhPt+eelv +yL++kv++++ + ++i+evd+y++ePwdL++ k + +e+ ewyfFs +d+ky++g+r+nrat++g+Wkatg+d
Do007897.1 12 VPPGFRFHPTEEELVGYYLARKVAASHksQTDLDIIQEVDLYRIEPWDLQErcssK--HggGEQaaEWYFFSYKDRKYPSGTRTNRATAAGFWKATGRD 108
69********************9988854333478**************9535442..13433346********************************* PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
k+vls+ ++e++g++ktLvfykgrap+g+ktdW+mheyrl
Do007897.1 109 KPVLSRsSREVIGMRKTLVFYKGRAPHGSKTDWIMHEYRL 148
*****977788***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MEQAAEEESC CVPPGFRFHP TEEELVGYYL ARKVAASHKS QTDLDIIQEV DLYRIEPWDL 60 QERCSSKHGG GEQAAEWYFF SYKDRKYPSG TRTNRATAAG FWKATGRDKP VLSRSSREVI 120 GMRKTLVFYK GRAPHGSKTD WIMHEYRLQL QANHHAPAQA STSSSQFTTI HSTTSQQCNK 180 AT
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034678 | 7e-89 | BT034678.1 Zea mays full-length cDNA clone ZM_BFb0011B16 mRNA, complete cds. |
GenBank | JN634080 | 7e-89 | JN634080.1 Zea mays secondary wall NAC transcription factor 4 mRNA, complete cds. |
GenBank | KJ727641 | 7e-89 | KJ727641.1 Zea mays clone pUT5568 NAC transcription factor (NAC103) mRNA, partial cds. |