PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do007855.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Protein Properties

Length: 311aa MW: 34067.2 Da PI: 9.841

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do007855.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.1	1.3e-31	33	137	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 f+kv tpsdv+k++rlv+pk++ae++ +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + g+ +++l+ Do007855.1 33 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaARGRLF 131 89*************************955556888*********************************************6658889999 PP EEEE-S CS B3 94 vkvfrk 99 + ++r+ Do007855.1 132 IDWRRR 137 999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-41	22	142	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.15E-29	30	137	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.32E-26	31	118	No hit	No description
SMART	SM01019	3.0E-21	33	138	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.367	33	138	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-28	33	137	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009908	Biological Process	flower development
GO:0048366	Biological Process	leaf development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEFTAGPTRS GGGGEERTTE QSAAAAVEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP 60 LDAAANEKGL LLSFEDRTGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFGR 120 GVGEAARGRL FIDWRRRPDP PLQYQYHRLP LPSVPYAPWA HAHHPAAVGA TARTTVLHLP 180 PSPSSLYDSH GRHVGYDAYG AGSRQLLFYR PHPHPHQQQH PQATVVLDSV PVRIPTTPGQ 240 HAEPPPPVAS SASKRVRLFG VNLDCAGSEE ESGGGRTAPP TQQTLPLQLP SPPSSSSSSS 300 GKARCSLNLD L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-64	28	138	3	114	B3 domain-containing transcription factor NGA1
5os9_B	2e-64	28	138	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do007855.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727001	1e-164	KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798126.1	0.0	B3 domain-containing protein Os03g0120900-like
Swissprot	Q8LMR9	1e-123	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A1E5W4M9	0.0	A0A1E5W4M9_9POAL; B3 domain-containing protein
STRING	Si036864m	1e-174	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	1e-65	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]