PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007744.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 734aa    MW: 82589.1 Da    PI: 8.645
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007744.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF732.4e-231058250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                rien   rqv f+kRr g+lKKA+ELSvLCda++ vi+ s++gk+ye +
  Do007744.1 10 RIENPVHRQVAFCKRRMGLLKKANELSVLCDADIGVIVCSPRGKMYELA 58
                8*********************************************965 PP
2SRF-TF71.76.5e-23542588248
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 
                 rien   rqvtf+kRr g++KKA+ELSvLCda++  i++s++gk+y+
  Do007744.1 542 RIENPVHRQVTFCKRRMGLMKKAKELSVLCDADIGAIVVSPNGKIYD 588
                 8********************************************97 PP
3K-box49.12.4e-17106188283
       K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGed.LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                 ++ +g s  ++k +   qe+  L +eie Lq+ +R + Ge+ ++++sl eL+ Le++Le  +++iRs+K++++ ++ie l+++
  Do007744.1 106 GEMQGGSSGKKKPQAIPQEVLMLTSEIELLQKGLRYMYGESgINEMSLDELHALESNLEIWIQNIRSQKMQIMSREIELLRNR 188
                 6677788899999**************************965************************************99987 PP
4K-box55.13.4e-19610704598
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 +g+s e++k++  qqe+  L +ei+ Lq+ +R + Ge d++ ++l eLq Le++Le  + + Rs+K++++ ++ie l++ke  lq +n  L+ ++
  Do007744.1 610 HGESSEQNKTQAIQQEVLALTREIDLLQKGLRYMHGEnDINHMNLGELQALENNLEMWVHNLRSQKMQIMSKEIEMLRNKEGILQAANDILQGRI 704
                 56778999****************************978**************************************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.502161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-22161IPR002100Transcription factor, MADS-box
CDDcd002657.36E-29365No hitNo description
PRINTSPR004044.6E-23323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-211056IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-233859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-18113188IPR002487Transcription factor, K-box
PROSITE profilePS5129711.094118206IPR002487Transcription factor, K-box
SuperFamilySSF513951.34E-104205530No hitNo description
Gene3DG3DSA:3.20.20.701.5E-122205531IPR013785Aldolase-type TIM barrel
PfamPF007247.0E-79205531IPR001155NADH:flavin oxidoreductase/NADH oxidase, N-terminal
CDDcd029335.88E-173205530No hitNo description
SMARTSM004321.6E-34533592IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-26533605IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.09533593IPR002100Transcription factor, MADS-box
CDDcd002654.84E-33535605No hitNo description
PfamPF003195.0E-22542587IPR002100Transcription factor, MADS-box
PfamPF014861.1E-22613703IPR002487Transcription factor, K-box
PROSITE profilePS5129713.221619711IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010181Molecular FunctionFMN binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MPRGKVQMRR IENPVHRQVA FCKRRMGLLK KANELSVLCD ADIGVIVCSP RGKMYELATN  60
GSVSISLLLM SMDAKVTLEC FTFPLFQIVY IRNMQGLIER YKTAYGEMQG GSSGKKKPQA  120
IPQEVLMLTS EIELLQKGLR YMYGESGINE MSLDELHALE SNLEIWIQNI RSQKMQIMSR  180
EIELLRNRVG KEYCTLPMIY SKRGVVLAPL TRQRSYGNVP QPHAILYYQQ RTTKGGLLIA  240
EATGVSDTAQ GYKDTPGIWT NEQVEAWKPI VDGVHEKGGI FFCQIWHVGR VSNSNIIPTS  300
VKCSNAAFQP NGQAPISSTD KPLKPQVRAN GVDVAAFAPP RRLETDEIPL IINDFRIAAR  360
NAIEAGFDGV EIHGAHGYLI DQFLKDQVND RTDKYGGSLE NRCQFALEVV QAVVDEIGAD  420
KVGIRLSPFA SYSEAPDSNP EALGLYMANA LNKFGILYCH VVEPRMVKLG EKFETPYSLR  480
PMRDAFKGTF IVAGGYNRED GNNAISTGYA DLVAYGRIFL SNPDLPRRAQ SVMTRGKVQM  540
RRIENPVHRQ VTFCKRRMGL MKKAKELSVL CDADIGAIVV SPNGKIYDLA TNGNMHGLIE  600
RYRRTFSEMH GESSEQNKTQ AIQQEVLALT REIDLLQKGL RYMHGENDIN HMNLGELQAL  660
ENNLEMWVHN LRSQKMQIMS KEIEMLRNKE GILQAANDIL QGRIIEQNGI LNFSGTKMIP  720
QAPFQLTMES NYYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vji_A1e-1762055302734012-oxophytodienoate reductase (OPR1)
2q3r_A1e-1762055302734012-oxophytodienoate reductase 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007744.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-51AGAMOUS-like 12