 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do007699.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
NAC |
| Protein Properties |
Length: 272aa MW: 29655.1 Da PI: 5.0019 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do007699.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 143.7 | 1e-44 | 6 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+v+Pw+Lp+ ++ee+ w++F++r++++a+g r++r+t sgyWka g+ v+
Do007699.1 6 LPPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSVDPWQLPEihemlcGGAGEEEPWFYFCQRQEREARGGRPSRTTPSGYWKAAGTPGVVY 104
79****************************99***************9646665422336779************************************ PP
NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
s+ +++++g+kkt+vfy+grap+g+kt+W m+eyr+
Do007699.1 105 SSaDRRAIGMKKTMVFYRGRAPSGTKTKWKMNEYRA 140
9978889***************************95 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MAAAGLPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSVDPW QLPEIHEMLC 60
GGAGEEEPWF YFCQRQEREA RGGRPSRTTP SGYWKAAGTP GVVYSSADRR AIGMKKTMVF 120
YRGRAPSGTK TKWKMNEYRA LQYYDAASLA AAGPTTDGSS SSTAHTAAAP PNVPPQLRSE 180
FSLCRLYTKS GTLRQFDRRP LPAAAAGGVP GKDPAGPSTA GAAASPLDDD DGSGSSMQQQ 240
QPQQLMERGA DDPYGDDVAI LDALLYWPGD WA
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-31 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-31 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 1e-31 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK071274 | 1e-145 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
