PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007623.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 318aa    MW: 34017.5 Da    PI: 6.4027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007623.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-1383134155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+++  A++++k+L+
  Do007623.1  83 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASVVSGAIDFVKELE 134
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-1481138No hitNo description
SuperFamilySSF474592.09E-1781154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.19382133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1083134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1483153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1088139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTLEALCAPS SDILVYDTFN AAAACAASAG SFVFGNAPAV EPSLPPPAQA PRTEGENMAQ  60
QQGRRKRRRR QRSVKNPVDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP ESYVHRSDQA  120
SVVSGAIDFV KELEQQLQSM EAQKLALQQQ QQRSNTAAAE RDAAQAPLRD PAPATEDAAA  180
REAAEGPPFA RFFRYPQYAW RHAPPPREDA AAAAAVGAED ASRVSAVADV EVGVMVDAHA  240
SLRVLAPRRP GQPLKMVAGM QALGLAVLHL NVTAAPGDLA LYTLSLKVEE GCCLATAEDI  300
AAAAHHVLCI IDAEAAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270GRRKRRRRQ
26369RRKRRRR
36468RKRRR
46471RKRRRRQR
58394RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278451e-116KJ727845.1 Zea mays clone pUT5889 bHLH transcription factor (bHLH134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319605.11e-134transcription factor bHLH96-like
TrEMBLA0A1E5VI530.0A0A1E5VI53_9POAL; Uncharacterized protein
STRINGSi010485m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-48bHLH family protein