 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do007558.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
C2H2 |
| Protein Properties |
Length: 149aa MW: 15854.1 Da PI: 8.7528 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do007558.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14 | 0.00015 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C + F ++ L H++ H
Do007558.1 39 FACHYCRRQFYSSQALGGHQNAH 61
78******************988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 149 aa
Download sequence Send
to blast |
MVGTAGVRQN AVRAAVELPV VVVPDVARSA AESEPPQLFA CHYCRRQFYS SQALGGHQNA 60
HKRERTLARH RADAEPLVLT RGGAPSFAVH GAFLQAATAP ALEWMRAPSG QPPPVVVVAA 120
GERWLTGGYV DGPGTGQEEL PKLDLTLKL
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004087 | 8e-39 | AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09. |
| GenBank | AP014958 | 8e-39 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012610 | 8e-39 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
| GenBank | CT835407 | 8e-39 | CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence. |
