PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do007233.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 181aa MW: 19551.1 Da PI: 10.2906

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do007233.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.8	1.3e-17	7	63	1	59
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redams 59 +C aCk+lrrkC+++Cv yfp ++p+kfa vh++FGasnv+kll++lp+ + r+ a+ Do007233.1 7 PCGACKLLRRKCTQGCV---YFPPDNPAKFADVHRVFGASNVSKLLSELPQGTqRQLAAL 63 7*************9...7999***********************98773555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.214	6	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-18	7	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSSSSSPCGA CKLLRRKCTQ GCVYFPPDNP AKFADVHRVF GASNVSKLLS ELPQGTQRQL 60 AALAAAMEVT REQQDLMMSQ AAAYAPGSSA GATVADAVPY EGGFLFQQQQ PSQAQTAVAL 120 TSIESSLSGD QALTELLSRQ HQRRWSGNVV QDHLRSRVRR GGASPECRRR RCRGSPSRKV 180 V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-20	4	75	8	81	LOB family transfactor Ramosa2.1
5ly0_B	4e-20	4	75	8	81	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do007233.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5URT6	1e-129	A0A1E5URT6_9POAL; Uncharacterized protein
STRING	TRIUR3_06488-P1	4e-26	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-23	ASYMMETRIC LEAVES 2-like 1