PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007228.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 767aa    MW: 85233.1 Da    PI: 8.203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007228.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-164487146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
       Do007228.1 44 RGRITPDEERLILELHAQYGSR-WSRIARSLP-GRTDNEIKNYWRT 87
                     899*******************.*********.***********96 PP
2Myb_DNA-binding53.17.4e-17504551148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde+lv+ v+++G ++W+  a+  g++Rt+k+c++rw +yl
       Do007228.1 504 KGPWTEEEDEQLVRFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 551
                      79********************************************97 PP
3Myb_DNA-binding49.69e-16557600146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rgr T++E+ l+v++++q+G++ W++Iar ++ gRt++++k++w++
       Do007228.1 557 RGRITADEERLIVQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 600
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-92450IPR009057Homeodomain-like
SuperFamilySSF466891.57E-202492IPR009057Homeodomain-like
PROSITE profilePS500904.312538IPR017877Myb-like domain
PROSITE profilePS5129423.7723993IPR017930Myb domain
SMARTSM007172.9E-154391IPR001005SANT/Myb domain
PfamPF002491.8E-144487IPR001005SANT/Myb domain
CDDcd001672.27E-114887No hitNo description
Gene3DG3DSA:1.10.10.609.5E-195189IPR009057Homeodomain-like
Gene3DG3DSA:3.30.200.206.6E-19171206No hitNo description
SuperFamilySSF561123.64E-77173215IPR011009Protein kinase-like domain
CDDcd066235.44E-136174461No hitNo description
SMARTSM002209.2E-82176466IPR000719Protein kinase domain
PROSITE profilePS5001145.347176466IPR000719Protein kinase domain
PROSITE patternPS001070182205IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.206.6E-19238271No hitNo description
PfamPF000694.3E-57243466IPR000719Protein kinase domain
SuperFamilySSF561123.64E-77245467IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.101.9E-59272473No hitNo description
PROSITE patternPS001080325337IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5129424.041499555IPR017930Myb domain
SuperFamilySSF466898.59E-28502598IPR009057Homeodomain-like
SMARTSM007174.7E-16503553IPR001005SANT/Myb domain
PfamPF002493.7E-15504551IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20505558IPR009057Homeodomain-like
CDDcd001674.93E-12506551No hitNo description
SMARTSM007171.1E-13556604IPR001005SANT/Myb domain
PROSITE profilePS5129418.072556606IPR017930Myb domain
PfamPF002493.1E-13557600IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-21559605IPR009057Homeodomain-like
CDDcd001674.25E-10561600No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MDHRSMAAAT MPMCGRNKRK DGLRRTGKSC RLRWVNYLHP GLRRGRITPD EERLILELHA  60
QYGSRWSRIA RSLPGRTDNE IKNYWRTRTR KQKAAKAAAS AASSSSSMTT TTASCSGSPS  120
SGCGTAASSS TASGTFKDGE LRLNQRGLRL ISEENGDENQ STNLKVEDVQ LSMDDLEMIQ  180
VIGKGSGGVV QLVRHKWVGT LYALKVIFGT LISSFELHMT FIDHILHLPV LQLLLQGIQM  240
NIQESVRKQI VQELKINQAT QSPHIVLCHQ SFYHNGVIYL VLEYMDRGSL ADIIKQVKTI  300
LEPYLAVLCK QVLEGLLYLH HERHVIHRDI KPSNLLVNRK GEVKITDFGV SAVLASSIGQ  360
RDTFVGTYNY MAPERISGSS YDYKSDIWSL GLVILECAIG RFPYIPSEGE GWLSFYELLE  420
AIVDQPPPSP PADQFSPEFC SFISSCIQKD PAERMSASEL LPRSFFSDCS TAGSSNHTMS  480
MCSRNKEDGE QIIIRGGGTA AMRKGPWTEE EDEQLVRFVR LFGERRWDFL AKVSGLRRTG  540
KSCRLRWVNY LHPDLRRGRI TADEERLIVQ LHAQWGSRWS RIARSLPGRT DNEIKNFWRT  600
RTRKKALKER RLIDSSSSSK AAEAAAAAAA SPMSSVTTTS CCPGSPNSGA ATPSSSASSD  660
DSALREGSGS RDAELEEAST ATAAVSQHQQ PQEYCCSMDQ LWNEIAAADA AAASYVLDSW  720
GAGHSYYGAA AAEPPPMPSS PVWEYCSDYS LWRIDDEXYY KKMLDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3sls_A2e-6317046621282Dual specificity mitogen-activated protein kinase kinase 1
3sls_B2e-6317046621282Dual specificity mitogen-activated protein kinase kinase 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007228.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919170.0FP091917.1 Phyllostachys edulis cDNA clone: bphyem213a09, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP615144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.39e-54myb domain protein 59