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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007123.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | FAR1 | ||||||||
Protein Properties | Length: 927aa MW: 100372 Da PI: 5.5964 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 100.7 | 1.5e-31 | 67 | 170 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w vtkle+ Hn Do007123.1 67 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradvadagdydSARGRRTRAVTRVGCKAMIRVKKQDNGRWSVTKLETAHN 165 ***********************************************************999************************************* PP FAR1 87 Helap 91 H+l+p Do007123.1 166 HPLVP 170 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-29 | 67 | 170 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF04434 | 2.9E-9 | 434 | 471 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 10.534 | 436 | 474 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.1E-7 | 449 | 476 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 927 aa Download sequence Send to blast |
MGDGDNDSVG YGAEMEVDAR SGSAPASSAS ASASASASAY AARAGAYDGV DPFEGMEFDD 60 EEDAWTFYNV YAHRVGFSTR ISVMHRSRRD GSVMSRQFVC AKEGFRTYRG KNEVARADVA 120 DAGDYDSARG RRTRAVTRVG CKAMIRVKKQ DNGRWSVTKL ETAHNHPLVP ANQAHCLRPH 180 KPLSECGKQR PFGGHRNGGA LLAIEPPPTP LTPPVPQTSI VQVVPQYVSD AAAKVFPLTR 240 LQFCKWHIIN EAQDKLSHLL DAFPSFHEDF INCINMSETI DEFEANWKTL ISKVSSQNSE 300 WLNSMYNCRN QWVPVYLRDT FFGDVSLKQQ CASRSSLFEG YIGSNTDSQS FIQQYEKALD 360 CCYEKEVKEE FETKYSPPDF KTSSPIEKQG AESYTRSMFL KFQQELIGAS VYTAEMVKEE 420 GSLSIYIVTK SEGSEKPVTV QFSSSGSSAT CSCRMFEYFG IVCRHILTVF GVRGVSALPS 480 QYLVKRWTKS AMDRSSSKKV DEVSRIEEPK EEQRSSAEDD EQSPTWRYNS LCREALRFAE 540 EGASSLEVYI VAMQALQEAA NRVNMAKRGI GQVAPLAVMP IAAQPPESFG KIQELSSNKQ 600 RKRKRNSNSS RENATSNQLM YVQQPVNFLF VAPGSSPALQ GPSQLVAAAP ISLSTQYGQT 660 SAANNSVDDN ISPASVVVDK FSGLPDRYAS APSSGNLQGG ETKSTGAVSQ TKEGSNSKSL 720 WNPQSHELSQ ANGNKGCGLV TVPIGLCLPS MDGSKISAAG VNSVNSGDIS SNGNLSLGLH 780 QPQSSAQQPA TRSQTKTLES IDSHANPEGS SIRAAAIAAG ARIASPSDAA SIIKAAQSKG 840 AIRIRPGENL PNYLKPLAPK PLSSLPPVNT PNLAHASPGH RSFGDSAAAK DAIFGSSDGS 900 DDDEYDDDDD TDDEEDEGLT GDDAEHE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007123.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF466201 | 0.0 | AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794566.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A1E5WFJ1 | 0.0 | A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | Si034021m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-86 | FAR1-related sequence 5 |