PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 927aa    MW: 100372 Da    PI: 5.5964
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007123.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1100.71.5e-3167170291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+              + + rrtra+tr+gCka+++vkk+++g+w vtkle+ Hn
  Do007123.1  67 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradvadagdydSARGRRTRAVTRVGCKAMIRVKKQDNGRWSVTKLETAHN 165
                 ***********************************************************999************************************* PP

        FAR1  87 Helap 91 
                 H+l+p
  Do007123.1 166 HPLVP 170
                 **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2967170IPR004330FAR1 DNA binding domain
PfamPF044342.9E-9434471IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.534436474IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-7449476IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MGDGDNDSVG YGAEMEVDAR SGSAPASSAS ASASASASAY AARAGAYDGV DPFEGMEFDD  60
EEDAWTFYNV YAHRVGFSTR ISVMHRSRRD GSVMSRQFVC AKEGFRTYRG KNEVARADVA  120
DAGDYDSARG RRTRAVTRVG CKAMIRVKKQ DNGRWSVTKL ETAHNHPLVP ANQAHCLRPH  180
KPLSECGKQR PFGGHRNGGA LLAIEPPPTP LTPPVPQTSI VQVVPQYVSD AAAKVFPLTR  240
LQFCKWHIIN EAQDKLSHLL DAFPSFHEDF INCINMSETI DEFEANWKTL ISKVSSQNSE  300
WLNSMYNCRN QWVPVYLRDT FFGDVSLKQQ CASRSSLFEG YIGSNTDSQS FIQQYEKALD  360
CCYEKEVKEE FETKYSPPDF KTSSPIEKQG AESYTRSMFL KFQQELIGAS VYTAEMVKEE  420
GSLSIYIVTK SEGSEKPVTV QFSSSGSSAT CSCRMFEYFG IVCRHILTVF GVRGVSALPS  480
QYLVKRWTKS AMDRSSSKKV DEVSRIEEPK EEQRSSAEDD EQSPTWRYNS LCREALRFAE  540
EGASSLEVYI VAMQALQEAA NRVNMAKRGI GQVAPLAVMP IAAQPPESFG KIQELSSNKQ  600
RKRKRNSNSS RENATSNQLM YVQQPVNFLF VAPGSSPALQ GPSQLVAAAP ISLSTQYGQT  660
SAANNSVDDN ISPASVVVDK FSGLPDRYAS APSSGNLQGG ETKSTGAVSQ TKEGSNSKSL  720
WNPQSHELSQ ANGNKGCGLV TVPIGLCLPS MDGSKISAAG VNSVNSGDIS SNGNLSLGLH  780
QPQSSAQQPA TRSQTKTLES IDSHANPEGS SIRAAAIAAG ARIASPSDAA SIIKAAQSKG  840
AIRIRPGENL PNYLKPLAPK PLSSLPPVNT PNLAHASPGH RSFGDSAAAK DAIFGSSDGS  900
DDDEYDDDDD TDDEEDEGLT GDDAEHE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007123.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662010.0AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794566.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A1E5WFJ10.0A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5
STRINGSi034021m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-86FAR1-related sequence 5