PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007027.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 332aa    MW: 36173 Da    PI: 7.6699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007027.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12190215126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  Do007027.1 190 YQPDICKDYKETGYCGYGDSCKFMHD 215
                 67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9188220IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878189217IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7189216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12190220IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10190215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.7E-13263309IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.81E-13267310No hitNo description
PfamPF139202.0E-8267308No hitNo description
CDDcd001624.35E-8268309No hitNo description
SMARTSM001841.6E-4268305IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.527268306IPR001841Zinc finger, RING-type
PROSITE patternPS005180283292IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADGGGGGGP GAGAGPAPVC SFVRKPPKNI RKRPTAPAGS DDDDDNGGGA LAALRSKKGP  60
SSAGKLVFSS ADASSEPRRF QYESSRTIQS TDTRATATLE TETEFDRDAR AIRERQLKQA  120
EEALKKNPSG APTPSASGSG AGEVYKGIHG YTDYKAGFRR EHTVSSEKAG GSHGPLRASA  180
HIRLSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEREWD EAEKARKRRI  240
AMGGGDGSND EAAEDDEDDD EEALPFACFI CRQPFVDPVV TKCKHYFCEH CALKHHSKNK  300
KCFVCNKPTL GIFNAAQEIR KKMAQDKKQQ ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6482323100317RING finger protein 113A
5z58_M4e-6482323100317RING finger protein 113A
6ff4_t4e-6482323100317RING finger protein 113A
6ff7_t4e-6482323100317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007027.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951287.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-172C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLK3YU040.0K3YU04_SETIT; Uncharacterized protein
STRINGSi017753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-124C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]