PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do006984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 306aa MW: 34020.3 Da PI: 6.4526 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 40.7 | 5.2e-13 | 47 | 71 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprl+WtpeLHerFv+av+qLGG++ Do006984.1 47 KPRLKWTPELHERFVDAVHQLGGPD 71 79*********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-11 | 45 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-7 | 47 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 2.6E-25 | 104 | 150 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MYHHQQQLQN HSHFLSSRQT FPPERHLLLQ GGSIPADPGL VLSTDAKPRL KWTPELHERF 60 VDAVHQLGGP DMVGCTMAME KPPEGNGSPA SHLNLGTQTN KSVHIGEALQ MQIDVQRRLH 120 EQLEVQRHLQ LRIEAQGKYL QSVLEKAQET LAKQNAGSVG LETAKLQLSE LVSKVSTECL 180 QHAFTGFEEM EGSQMVQGHT MQLGDGSVDS CLTACDGSQK DQDILSISLS AHRGKKIGGM 240 AFDIQAKERG SEDLFLDKLS RTPPSHQERR ERDSFIMAAK LDLNINDTND GPQNCKKFDL 300 NGFNWT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do006984.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU943712 | 0.0 | EU943712.1 Zea mays clone 1680873 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796515.1 | 0.0 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9SQQ9 | 3e-68 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A1E5VB74 | 0.0 | A0A1E5VB74_9POAL; Myb-related protein 2 | ||||
STRING | Si036390m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04030.2 | 5e-71 | G2-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|