PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | AP2 | ||||||||
Protein Properties | Length: 416aa MW: 45144.8 Da PI: 5.9377 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.4 | 2.2e-10 | 46 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse..ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV++++++gr++A+++d + g ++k+ g ++ ++ Aa+a++ a++k++g Do006929.1 46 AYRGVTRHRWTGRFEAHLWDK-DarSGsRNKKGKQGAYDDEDAAARAHDLAALKYWG 101 69******************4.445558775555599***99*************97 PP | |||||||
2 | AP2 | 47.3 | 5e-15 | 144 | 195 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + +k+ +lg++ t eeAa a++ a+ + +g Do006929.1 144 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 195 89****99**********988422...5**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-13 | 45 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-10 | 46 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.925 | 46 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-8 | 46 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-15 | 46 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 47 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.99E-22 | 144 | 205 | No hit | No description |
SuperFamily | SSF54171 | 3.86E-17 | 144 | 205 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-9 | 144 | 194 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.741 | 145 | 203 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-17 | 145 | 203 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-26 | 145 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 185 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:1904278 | Biological Process | positive regulation of wax biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MAKPRREAAA DEDPSAAATG VVGKTKLKRA RKKSGPRESP SQRSSAYRGV TRHRWTGRFE 60 AHLWDKDARS GSRNKKGKQG AYDDEDAAAR AHDLAALKYW GLGTILNFPL SGYDEELKEM 120 EGQPREEYIG SLRRRSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVLGNKY LYLGTYATQE 180 EAAVAYDIAA IEHRGLNAVT NFDISHYVNH WQRHRHGPGG DGLGATDGAA PIVPFQLPDD 240 LPDERPAAVG LDETTGAAGF HDGEDHLPHH ACPFLGDDDG QLLPGQVGPA AHHNVPTSSA 300 LDLLLQSLKF KEMMEQVTAA AMADSNSSSS PAAPVESSSS SSSSSPPLPL SPPPQQQPEF 360 SGGTPARCSF PDDVQTFFDF ENGSDMGLTY AEVDTFLFGD LSEYAAPMFL DCELDV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006929.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069847 | 1e-169 | BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds. | |||
GenBank | KJ728211 | 1e-169 | KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973570.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A1E5W7V5 | 0.0 | A0A1E5W7V5_9POAL; AP2-like ethylene-responsive transcription factor | ||||
STRING | Si013842m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79700.2 | 2e-70 | AP2 family protein |