PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006893.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 667aa    MW: 73774.9 Da    PI: 5.2807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006893.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-1387174197
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ffkv+    +++++ + +p +fa+++ ++   +   + led  g +W+v+l  + ++g   ++ GWk+Fv ++ +  g+f+vF+ + rs f  +v++f
  Do006893.1  87 FFKVM--MGYFSED-MDIPPPFARTIlDLA--G-SNIYLEDAFGLRWRVRL--CLTDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARSVF--TVQMF 174
                 77877..5666666.***********6333..3.37***************..999999*************************9888888..77766 PP
2B331.92.3e-105986622995
                 -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 kk++ k ++l+d+  r W v +  + +++   + +GW + +++n+L+egD++ F+l+g+se ++ v 
  Do006893.1 598 KKQGRKVVILKDPCMRLWPVLY--QCTPRFSGFITGWVDICRENNLQEGDTCEFELSGNSELSFQVL 662
                 455667899*************..55665555667**********************9988866654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-1884177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-2084177IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.43584177IPR003340B3 DNA binding domain
CDDcd100179.02E-1685174No hitNo description
PfamPF023629.1E-1187174IPR003340B3 DNA binding domain
SMARTSM010193.2E-1287177IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32570665IPR003340B3 DNA binding domain
SMARTSM010190.0026573665IPR003340B3 DNA binding domain
CDDcd100171.84E-11584662No hitNo description
SuperFamilySSF1019361.45E-14590665IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-8598661IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-12599663IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MMELIAGGAL KKEPEETAVE IDSDEEEAEK VVKRRRRRKK KACDPHQKRP CVDCSKRCAR  60
IHGRAASSSY PSPSSSKARP IPAVPSFFKV MMGYFSEDMD IPPPFARTIL DLAGSNIYLE  120
DAFGLRWRVR LCLTDGVLSF GHGWKNFVLD HAVSCGEFLV FRQIARSVFT VQMFAPSAVE  180
RLFLCERNKR QSRKRKPRPK TSCPSSQTVR ISKNSVENCR RKKKKQRTDH HRNDRDCQMP  240
DHVCIDDSDA PDSASELKCS ETSERVPGVG VAESQEISEA PTGHQCQVQD LLDAEAELAD  300
DCTISEEKRS QCIARVTEHP TYDATVMEHD EGLILPTNVD ASGSLALMDL NEGSIDDIFL  360
SADIYEFETD ICNPEAFSVD LNMEGLITTG QNSGFSYLED TPQSHLSSMG AGHSFVMPET  420
LSCTENKEMT DALETGTGYA CIAVHDIDIN ALPANEPSPF GEENSSPPAD AEVHSRECAL  480
SGSNKDRDND LLPCKDTQAA QKQGYVLALS LAKQDKQQDG QGNKQHSTGQ NAVEVIPSST  540
KLHEHPHLSP NPHQTETSES GGVLALTASS SKFCIAVPAP GQTWLELPNR LPVIPRTKKQ  600
GRKVVILKDP CMRLWPVLYQ CTPRFSGFIT GWVDICRENN LQEGDTCEFE LSGNSELSFQ  660
VLVPNLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13237KRRRRR
23240KRRRRRKKK
33440RRRRKKK
4219224RRKKKK
5220226RKKKKQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006893.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972298.10.0B3 domain-containing protein Os01g0905400 isoform X1
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A1E5W8C90.0A0A1E5W8C9_9POAL; B3 domain-containing protein
STRINGSi004140m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]