PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006862.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 461aa    MW: 52737.7 Da    PI: 6.3618
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006862.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.22.2e-23117213186
    trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 +Wt+++v++Li+a+++++++ +++           +kk++W+++sk+m er +++sp+qC++k+++lnkryk+++++ +++ ++++  + +++d ++
  Do006862.1 117 KWTDSMVKLLITAVSYTGDDQSADLggvrrhftvmQKKGKWRAISKVMGERSCNVSPQQCEDKFNDLNKRYKRLTDILGRGaACNVLANPALLDTMN 213
                 7***************9999998744556667777********************************************996688888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-19115239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEGNNLPPGN MMQWAPYGSL DSHSNSVENH TPNSRNQIFN NSQMPGNFTM SATEPDDFPG  60
FPFIELEKSD KHHHHHRHSH HSIINCMSDD EEHDMIENAT DTPSGKSKKG SVWHRMKWTD  120
SMVKLLITAV SYTGDDQSAD LGGVRRHFTV MQKKGKWRAI SKVMGERSCN VSPQQCEDKF  180
NDLNKRYKRL TDILGRGAAC NVLANPALLD TMNNLSDKMK DDVKKILNSK HLFYQEMCSY  240
HNNNRNHLPE DHALQNSLLR ALRCKEEHDP RRDASVDADE DDQSADSDYE KNDEEQNPVH  300
TSMSERSMQK RACHGDVALI NSSSHKGSET SGPHGITADT NKISPDGTNL ALLQKDLASQ  360
ALEIQRRRLL IEENDLELRK KRFSWEQYRK KNDRAIERMI LKNEYMMLEN KRLELEIRNK  420
ELEFDTVDIS KAFQDETNLA LLQLTGLGFT STRDSETSLA D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365381RRRLLIEENDLELRKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449041.10.0uncharacterized protein LOC8070669
TrEMBLA0A1E5UTE30.0A0A1E5UTE3_9POAL; Uncharacterized protein
STRINGSb05g003890.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-88sequence-specific DNA binding transcription factors