PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do006751.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

TCP

Protein Properties

Length: 309aa MW: 31314.3 Da PI: 6.0732

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006751.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92	1.3e-28	1	155	24	137
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg................................. 88 ++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Do006751.1 1 MPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSIPahlraaalpgprfggargdpwdrvvglgfggae 99 9********************************************9998889999999977777999999999******************** PP TCP 89 ....kaaksaakskksqksaasalnlakesr.akarar.are.rtrekmriknkln 137 + ++++ + s +s + l+++ +s+ a a+++ +r+ r++++m+++++++ Do006751.1 100 gppsATSSASSPLLLSFHSGSVGLDVSPSSSsAAASSDlSRKrRWEQEMQQQQQQQ 155 963333333777777777777888885551444444678878899998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-31	1	155	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.552	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG 60 SSFSIPAHLR AAALPGPRFG GARGDPWDRV VGLGFGGAEG PPSATSSASS PLLLSFHSGS 120 VGLDVSPSSS SAAASSDLSR KRRWEQEMQQ QQQQQQQYQQ QMAGYTQSQM PGTVWMVPST 180 NAQAAAAAGG GGESIWTFPQ AASGGGGATV YRGVPSGLHF MNFPAPMALL PGGQQLGLGQ 240 AGGGNDNGSG SGGGEGHMGI LAALNAYRAQ AASDAAAAAQ NGAEGGSSQH HQQHGGGDRQ 300 ESMSPSDDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006751.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965036.1	1e-129	transcription factor TCP15
TrEMBL	A0A1E5WKA6	0.0	A0A1E5WKA6_9POAL; Uncharacterized protein
STRING	Pavir.J39613.1.p	1e-135	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	6e-27	TCP family protein