PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do006702.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 400aa MW: 42682 Da PI: 6.8672

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do006702.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5.1e-05	78	99	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk F++ ++ H+r+H Do006702.1 78 ECPECGKFFKNDKSMFGHLRSH 99 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.242	77	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	77	99	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.0017	78	101	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.01E-8	78	99	No hit	No description
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.01E-8	257	284	No hit	No description
SMART	SM00355	0.27	262	285	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.6E-7	262	286	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.39	262	289	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	264	285	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSSHGRDEFD GHNADSTFDE ELTGDEYASN DGGVPVAGGE AGAEEEEGLL LPNDGHGGGD 60 SGGTKESSGS RGSGGDVECP ECGKFFKNDK SMFGHLRSHP KRGYKGATPP IKKLKMSSDT 120 PAAASPSFSS PDTDRPPAHH SGLSGRDHQL SPLEIMCAYA ILTLKYRGND QAAQKVPPPP 180 LFARVDAIGQ AEGGIRGSVT GNAAAEFKCN AGAEAGNLGN CAEHGDSIVK IPKKRRNMPK 240 EVREAHRKKA KLVPTPKEKR PYVCKHCKAE FPTNQALGGH VAGHHREKKV PRLNDSSGMA 300 TESHGKQQQV KGGGDHDNGW RDNDLSLRRG LLSEQFSMAL NMPWQSGQAS GGQMSQHSER 360 SNNGQSPVVA APTPTTTPTE DGETRRLWNI DLNVEAQEQE

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSSHGRDEFD GHNADSTFDE ELTGDEYASN DGGVPVAGGE AGAEEEEGLL LPNDGHGGGD  60
SGGTKESSGS RGSGGDVECP ECGKFFKNDK SMFGHLRSHP KRGYKGATPP IKKLKMSSDT  120
PAAASPSFSS PDTDRPPAHH SGLSGRDHQL SPLEIMCAYA ILTLKYRGND QAAQKVPPPP  180
LFARVDAIGQ AEGGIRGSVT GNAAAEFKCN AGAEAGNLGN CAEHGDSIVK IPKKRRNMPK  240
EVREAHRKKA KLVPTPKEKR PYVCKHCKAE FPTNQALGGH VAGHHREKKV PRLNDSSGMA  300
TESHGKQQQV KGGGDHDNGW RDNDLSLRRG LLSEQFSMAL NMPWQSGQAS GGQMSQHSER  360
SNNGQSPVVA APTPTTTPTE DGETRRLWNI DLNVEAQEQE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do006702.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813526.1	1e-159	uncharacterized protein LOC112890871
TrEMBL	A0A1E5UV69	0.0	A0A1E5UV69_9POAL; Uncharacterized protein
STRING	Si012553m	1e-162	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13916	20	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	1e-06	C2H2-like zinc finger protein