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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | DBB | ||||||||
Protein Properties | Length: 218aa MW: 22276 Da PI: 5.4991 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.2 | 1.3e-06 | 5 | 46 | 6 | 41 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ e+ C ++ lC++C + H+ H++v Do006677.1 5 CDACGRAEAVVLCCADEAALCRSCDAAVHSAnrlagrHSRVA 46 *****************************6577888888775 PP | |||||||
2 | zf-B_box | 25.7 | 2.4e-08 | 69 | 108 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + C+ ++ek +fC +++ llC+ C ++ H+ H Do006677.1 69 PACDICQEKTGYFFCLEDRALLCRPCDVAVHSAgahvasH 108 68*****************************657744455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.769 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.37E-6 | 5 | 47 | No hit | No description |
SMART | SM00336 | 1.6E-8 | 5 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.328 | 66 | 113 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-12 | 66 | 113 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.9E-7 | 68 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.60E-8 | 69 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MKIGCDACGR AEAVVLCCAD EAALCRSCDA AVHSANRLAG RHSRVALLPS SATGGPSPNT 60 IVGGGDSHPA CDICQEKTGY FFCLEDRALL CRPCDVAVHS AGAHVASHRR FLITGVRVGG 120 GLECHHVPGS DGLAGAVVSP STSSGNGSSS APSSGNAMTL PDKVRPLSSA RAVAAREDLG 180 DQQWPWSEFL VDDDVATEGM ELFCPLGVSE PVSSSLTG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006677.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960780.2 | 4e-99 | B-box zinc finger protein 20 | ||||
Swissprot | Q9SYM2 | 3e-42 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A1E5WEM9 | 1e-154 | A0A1E5WEM9_9POAL; B-box zinc finger protein 22 | ||||
STRING | Si024510m | 1e-98 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 5e-36 | light-regulated zinc finger protein 1 |