PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do006676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 273aa MW: 30775.3 Da PI: 9.8253 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.5 | 2.7e-31 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng++KKA+ELSvLCdaeva+i+fss+g+lyeys+ Do006676.1 24 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74 79***********************************************95 PP | |||||||
2 | K-box | 93.4 | 3.8e-31 | 102 | 186 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + qqe+akL+++i++Lq+++Rhl+G+++e+LslkeL+qLe++Lek+++kiR++K+ell ++i+++ k+e elq+++++Lr+k+ee Do006676.1 102 NAQQESAKLRNQIQMLQNTNRHLVGDSVENLSLKELKQLESRLEKGISKIRARKSELLSAEINYMVKRETELQNDHMNLRTKIEE 186 679********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.062 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-33 | 17 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.81E-45 | 17 | 93 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.217 | 100 | 190 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-22 | 102 | 184 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048283 | Biological Process | indeterminate inflorescence morphogenesis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MYVKNLLAFS RDLSTMGRGR IEIKRIENNT NRQVTFSKRR NGLIKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYSNNSVKAT IERYKKAHAV GSSSGPPLLE LNAQQESAKL RNQIQMLQNT 120 NRHLVGDSVE NLSLKELKQL ESRLEKGISK IRARKSELLS AEINYMVKRE TELQNDHMNL 180 RTKIEEGEQQ LQQVTVARSA AAAAAGVELN PFLQMDTKCF FPTGPFGALD MKCFFPGGLQ 240 MLEAHRQMLT TELNLGYQLA PPSADAINNP HQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do006676.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ZMU31522 | 0.0 | U31522.1 Zea Mays MADS box protein (ZmOV23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960786.1 | 1e-173 | MADS-box transcription factor 13 | ||||
Swissprot | Q2QW53 | 1e-115 | MAD13_ORYSJ; MADS-box transcription factor 13 | ||||
TrEMBL | A0A1E5WEP1 | 0.0 | A0A1E5WEP1_9POAL; MADS-box transcription factor 13 | ||||
STRING | Si022981m | 1e-172 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-78 | MIKC_MADS family protein |