PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006669.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ZF-HD
Protein Properties Length: 301aa    MW: 31073.9 Da    PI: 7.8408
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006669.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.43.5e-282268556
  ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                 +YkeC++NhAas+Gg+++DGCgE+mps     ++++lkCaACgCHR+FHRr 
   Do006669.1 22 KYKECMRNHAASIGGQSFDGCGEYMPS-----SPDSLKCAACGCHRSFHRRA 68
                 7*************************9.....799***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015662.6E-242268IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-192267IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.7E-232268IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.4332368IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.12E-18167236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-29171237IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-27178235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMDQLSLVPY EGAGGGGGDG GKYKECMRNH AASIGGQSFD GCGEYMPSSP DSLKCAACGC  60
HRSFHRRAAG PCAGAPSVFF RPPPPPLLPA LPAPPPQHFQ HHQHQAALQA FLPSVPAAGV  120
APPHLALPYQ AVPNAAAAPW LARSGSETPP RADDFGIGVA GLGLGGVVIG SGSGSFGRKR  180
FRTKFTPEQK ERMREFAEKQ GWRIQRNDDG ALERFCDEIG VKRQVLKVWM HNHKNQLAST  240
TSPTAAAAAG IGGMGINPAA SAGIGINPGT GVTGDGDGDD TDDDSPPRAA VSSASPSPIS  300
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-251792401879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006669.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975654.11e-109zinc-finger homeodomain protein 8-like
SwissprotQ7X7N34e-81ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A1E5VKC00.0A0A1E5VKC0_9POAL; Zinc-finger homeodomain protein 8
STRINGOMERI04G10740.16e-81(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-21homeobox protein 22