![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do006669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 301aa MW: 31073.9 Da PI: 7.8408 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.4 | 3.5e-28 | 22 | 68 | 5 | 56 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +YkeC++NhAas+Gg+++DGCgE+mps ++++lkCaACgCHR+FHRr Do006669.1 22 KYKECMRNHAASIGGQSFDGCGEYMPS-----SPDSLKCAACGCHRSFHRRA 68 7*************************9.....799***************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 2.6E-24 | 22 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-19 | 22 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.7E-23 | 22 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.433 | 23 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.12E-18 | 167 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-29 | 171 | 237 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.6E-27 | 178 | 235 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MMDQLSLVPY EGAGGGGGDG GKYKECMRNH AASIGGQSFD GCGEYMPSSP DSLKCAACGC 60 HRSFHRRAAG PCAGAPSVFF RPPPPPLLPA LPAPPPQHFQ HHQHQAALQA FLPSVPAAGV 120 APPHLALPYQ AVPNAAAAPW LARSGSETPP RADDFGIGVA GLGLGGVVIG SGSGSFGRKR 180 FRTKFTPEQK ERMREFAEKQ GWRIQRNDDG ALERFCDEIG VKRQVLKVWM HNHKNQLAST 240 TSPTAAAAAG IGGMGINPAA SAGIGINPGT GVTGDGDGDD TDDDSPPRAA VSSASPSPIS 300 V |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-25 | 179 | 240 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do006669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975654.1 | 1e-109 | zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q7X7N3 | 4e-81 | ZHD8_ORYSJ; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A1E5VKC0 | 0.0 | A0A1E5VKC0_9POAL; Zinc-finger homeodomain protein 8 | ||||
STRING | OMERI04G10740.1 | 6e-81 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13649 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-21 | homeobox protein 22 |