PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do006395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 34618.4 Da PI: 8.3222 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.9 | 4e-12 | 45 | 69 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+rlrWt++LH+rFv+a++qLGG++ Do006395.1 45 KQRLRWTSDLHNRFVDAIAQLGGPD 69 79*********************98 PP | |||||||
2 | G2-like | 49.4 | 1e-15 | 117 | 147 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk +l +m+v+g+t++hvkSHLQkYRl Do006395.1 117 SRATPKGVLTVMGVPGITIYHVKSHLQKYRL 147 69****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 43 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.9E-8 | 45 | 70 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 8.24E-7 | 110 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-11 | 117 | 148 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 119 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.1E-23 | 180 | 225 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MMYHAKNFSV PFAPQRAQNN EHASNIGAIG GSNISNPANP VGSGKQRLRW TSDLHNRFVD 60 AIAQLGGPDS GYSILCRVLV IVVELDALHK LSSARIFCID GITMKKLNLA KYWLHISRAT 120 PKGVLTVMGV PGITIYHVKS HLQKYRLAKY IPESPAEGSK DEKKDSSDSL SNTDSAPGLQ 180 INEALKMQME VQKRLHEQLE VQRQLQLRIE AQGRYLQMII EEQQKLGGSI KASEDQKVSH 240 SPPSLDEYPE STQPSPKKPR IDALSPDSER DTTQPEFESH LIGPWDQEIC GKNICGVAFP 300 VEFKADPGRS KS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do006395.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU975261 | 0.0 | EU975261.1 Zea mays clone 485946 MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961661.1 | 0.0 | myb family transcription factor PHL7 | ||||
TrEMBL | A0A1E5V7A3 | 0.0 | A0A1E5V7A3_9POAL; Myb family transcription factor PHL7 | ||||
STRING | Si022972m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-43 | G2-like family protein |