PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do006233.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 439aa    MW: 47482.8 Da    PI: 4.2688
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do006233.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.64.3e-101045944
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                r+ tf +R+ g+ KKA EL  LC+++vav+ +++ g
  Do006233.1 10 RTRTFNQRKLGLKKKALELAELCEVDVAVVCAGPGG 45
                788****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0014153IPR002100Transcription factor, MADS-box
CDDcd002662.38E-17173No hitNo description
PROSITE profilePS5006611.858145IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-13373IPR002100Transcription factor, MADS-box
PfamPF003192.2E-10845IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MALIGKAGSR TRTFNQRKLG LKKKALELAE LCEVDVAVVC AGPGGGAPDV WEFGSAGVID  60
RYRKLPADKR AKHTHLSYLN VELGKEKAKL AKARQEGPKA LASPGAASLK DMKLDELLGS  120
IDGALLATAQ RRKALGMPDS DVAADGGQLG QGVPLVGDGF DDMEAWVDEL TWHGVEQQPL  180
NASMAVQPAP GVQYINGVEA QPLNANMTTQ PAPGVQYING GDSMDMGGNQ YLQQMGGNGV  240
NGRSQLPWDA YQLHNDTVPC PDYGFQYTDS NYWYSDMDGY PQMPVPSNAN ANAYDVDVWF  300
NQAMWSTDES QCDAVVPVEY CHPSQDITCN PVYMPPERST MATGDYFTGV SGIGLDGSFM  360
DASGHEYGTQ CLADYFQCPD ARQQTGVEPL HYLSGVAEGI RYYDLEAGSC SSGTLQFSSE  420
QLQSDMRDQD SGVQNFWVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo006233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5UTY80.0A0A1E5UTY8_9POAL; Uncharacterized protein
STRINGSi004289m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960