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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do006093.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
NAC |
Protein Properties |
Length: 343aa MW: 38887.5 Da PI: 6.5101 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do006093.1 | genome | Dichan | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 181 | 3.1e-56 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96
+ppGfrFhPtdeelv++yL+kkv+++k++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k
Do006093.1 8 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DVIKDVDLYKIEPWDLQEkcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYT-K 104
69****************************.9***************952444443555**************************************.9 PP
NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129
+ lvg++ktLvfy+grap+g+k+dW+mheyrle
Do006093.1 105 NCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 137
99*****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 343 aa
Download sequence Send
to blast |
MDTAFSHVPP GFRFHPTDEE LVDYYLRKKV ASNKIDLDVI KDVDLYKIEP WDLQEKCKIG 60 TEEQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKP IYTKNCLVGM RKTLVFYRGR 120 APNGQKSDWI MHEYRLETTE NGITSEEGWV VCRVFKKRVA TVRRMVDGAP CWFDDHLAGF 180 MPPDLGSPRQ LMHHHHPSAS AAAYGGQQLY HCKPELEYHH LLPSQEAFLQ QLPQLESPKP 240 PAYVAHGSSS LQSSDEASRY TTAQQPPMES AYMVAGDDDS VTDWRVLDKF VASQLFSHGD 300 GTPKEAGYSN PAQVFQAENK QPQEVLDYAS TSASGGGEAD LWK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 6e-51 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-51 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-51 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-51 | 8 | 158 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-51 | 8 | 158 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-51 | 8 | 158 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT075092 | 0.0 | KT075092.1 Panicum virgatum secondary wall NAC master switch (SWN8A) mRNA, complete cds. |