PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005979.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 508aa    MW: 54709.5 Da    PI: 8.8073
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005979.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-05397422123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 + C+  +C ++F++k +L +H ++ +
  Do005979.1 397 FDCNidYCRMTFKTKTELSVHKKNmC 422
                 679999***************99866 PP
2zf-C2H211.50.00096480504123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ykC+   C+k ++  s+++rH r++
  Do005979.1 480 YKCTtpGCNKIYKFVSDFTRHRRRC 504
                 99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035535397419IPR015880Zinc finger, C2H2-like
SMARTSM003553.3420444IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219420449IPR007087Zinc finger, C2H2
PROSITE patternPS000280422444IPR007087Zinc finger, C2H2
SuperFamilySSF576672.74E-9436478No hitNo description
Gene3DG3DSA:3.30.160.601.9E-9437470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.027450474IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367450479IPR007087Zinc finger, C2H2
PROSITE patternPS000280452474IPR007087Zinc finger, C2H2
SuperFamilySSF576673.33E-7469503No hitNo description
Gene3DG3DSA:3.30.160.602.0E-8471502IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035530480502IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MRIRRYAARL LSSTNSTGSA PSSPPPPPAA SWLHAAAAAD DCCAFCELSR SAPQEGPDAV  60
KHKGHIAGRV PESDVRGDER VRQAHQPPAP EAKKCKTDHG PNVNKTSVGR QALRGASGIS  120
EAAAKPEVAG GATLVSEADA ESSVKPEVTG GNSLVNGWTA ELEVLKGAPD EAAHDPETAE  180
RVSSESKAAT VPGVTSIAQQ VTGVASVMHE TTKVESAGED TGRASCNVDN TAALDKPQLP  240
SCDPNIGNVQ VGNAGETVAS TLQPSGCDAA KAGGSVNSRS NGPVRAKGPT VEGRVRTDRS  300
VTPSVSCLFD TVARSIGTSG RTDVICYARR RGKRKLELLE VKTENIELEE ETLDRTGCSE  360
SVLSTAESAD VKLVDIKKEL MDNAAASKVK KMKRNGFDCN IDYCRMTFKT KTELSVHKKN  420
MCTVKSCSRH FRSHKYLRRH QSVHNDDMPY KCPWDGCVMA FKWSWDRAEH FKVHAGVKPY  480
KCTTPGCNKI YKFVSDFTRH RRRCKPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A8e-4039750323129Lysine-specific demethylase REF6
6a58_A8e-4039750323129Lysine-specific demethylase REF6
6a59_A8e-4039750323129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328334RRRGKRK
2328335RRRGKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005979.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A1E5WDR20.0A0A1E5WDR2_9POAL; Lysine-specific demethylase SE14
STRINGPavir.J38242.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-40relative of early flowering 6